Project 2: Physical Mechanisms and Clinical Implications of Mechano-transduction

项目来源

美国卫生和人类服务部基金(HHS)

项目主持人

未公开

项目受资助机构

UNIVERSITY OF PENNSYLVANIA

项目编号

5U54CA193417-05

立项年度

2019

立项时间

未公开

研究期限

未知 / 未知

项目级别

国家级

受资助金额

未知

学科

Bioengineering; Cancer; Digestive Diseases; Liver Cancer; Liver Disease; Rare Diseases;

学科代码

未公开

基金类别

RESEARCH CENTERS

关键词

未公开

参与者

RADHAKRISHNAN, RAVI

参与机构

NATIONAL CANCER INSTITUTE

项目标书摘要: Project 2: Physical Mechanisms and Clinical Implications of Mechano-transduction in Hepatocellular Carcinoma Tumor Microenvironment. In Project 2, a team of investigators from the physical sciences, engineering, and cell biology will interact closely with hepatologists and liver oncologists through the clinical-core, and theorists through the theory-core. We will advance and test a new hypothesis for mechano-transduction in the hepatocellular carcinoma (HCC) microenvironment. We hypothesize that an entire membrane signalosome will translate changes in the physical microenvironment into alterations in membrane-mediated regulatory processes such as receptor trafficking and membrane-cortex interactions. This in turn will alter the specificity of signaling pathways and influence cell fate. Theory/membrane modeling will advance hypotheses on how physical mechanisms govern biological (cellular) behavior, and will direct design of physical parameters tunable in experiments. Super resolution microscopy will be used to track nanoscale assemblies, and force spectroscopy and microrheology will be used to determine static/dynamic responses of the cell membrane and membrane cortex interactions. In parallel, high-dimensional kinome profiling and single-cell gene expression will link these nanoscopic mechanisms with cellular decisions. Outcomes of these experiments will quantitatively and mechanistically relate the physical microenvironment in HCC to dictation of cell fate in cancer progression, as well as providing iterative feedback to the computational models for refinement of mechanisms, formulate new hypotheses. Specifically, the Aims of project 2 will establish quantitative and mechanistic relationships between the physical characteristics of the HCC microenvironment (namely membrane tension, matrix stiffness, substrate stiffness, and uniaxial compressive stress) and membrane-mediated signaling mechanisms, namely how receptor trafficking and membrane cortex interactions alter specificity of downstream of growth factor and G-protein mediated signals to regulate gene expression and cell fate. Our studies in Project 2 will also probe how static and dynamic responses of the cell membrane and membrane-cortex interactions in normal hepatocytes and stromal cells are altered by changes in the physical microenvironment variables relevant for HCC. Our project on mechano-transduction in HCC at the cellular scale is closely aligned with the goals of Project 1, namely HCC disease progression at the tissue scale, and those of Project 3, namely nuclear mechanics and HCC oncogenesis at the subcellular scale. We expect that the new physical-chemical paradigms governing HCC emerging from this project will inform and impact future HCC therapies. In particular, our results provide multidimensional, multiphysics characterization of subcellular (membrane, cortex, signals, gene-expression) alterations in response to changes in the microenvironment variables, some at single-cell resolution. The findings in Project 2 compliment those in Project 1, but extend the analyses and outcomes at the cellular to sub-cellular scale, molecular scale, and help identify physical biomarkers at this finer length-scale. Kinome profiling in Project 2 should also link our physical perspective to possible combinations of therapeutic targets.

  • 排序方式:
  • 1
  • /
  • 1.Photoactivatable trimethoprim-based probes for spatiotemporal control of biological processes

    • 关键词:
    • OPTOGENETIC CONTROL; MECHANISMS
    • Wu, Daniel Z.;Lampson, Michael A.;Chenoweth, David M.
    • 《CHEMICAL TOOLS FOR IMAGING, MANIPULATING, AND TRACKING BIOLOGICAL SYSTEMS: DIVERSE METHODS FOR PROKARYOTIC AND EUKARYOTIC SYSTEMS》
    • 2020年
    • 会议

    Optogenetic tools allow regulation of cellular processes with light, which can be delivered with spatiotemporal resolution. By combining the chemical versatility of photoremovable protecting groups with the biological specificity of self-labeling tags, we developed a series of chemi-optogenetic tools that enable protein recruitment with precise spatiotemporal control. To this end, we created a modular platform for chemically inducible proximity (CIP), a technique in which two proteins of interest are brought together by the presence of a small molecule to induce a biological effect. The local proximity of a protein and its substrate has been shown to be sufficient to initiate a desired biological effect, making CIP a valuable technique towards probing cellular processes. The high affinity and specificity of these tags result in rapid initiation of dimerization, allowing biochemical processes to be studied on a biologically relevant timescale. In this chapter, we describe the synthesis and application of chemioptogenetic probes for spatiotemporal control of protein proximity.

    ...
  • 排序方式:
  • 1
  • /