食管鳞癌组织免疫细胞亚群时空分布和靶向突变抗原的免疫干预研究
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1.Computer-aided design of PVR mutants with enhanced binding affinity to TIGIT
- 关键词:
- Cancer immunotherapy; TIGIT; PVR; Molecular dynamics; Mutagenesis; Drugdesign
- Zhou, Xiaowen;Du, Jiangfeng;Zhou, Xiuman;Niu, Xiaoshuang;Li, Wanqiong;Chen, Chunxia;Lv, Sifan;Wu, Aijun;Gou, Shanshan;Sun, Yixuan;Zhai, Wenjie;Qiu, Lu;Qi, Yuanming;Zhao, Wenshan;Gao, Yanfeng
- 《CELL COMMUNICATION AND SIGNALING》
- 2021年
- 19卷
- 1期
- 期刊
Background: TIGIT, as a novel immune checkpoint molecule involved in T cell and NK cell anergy, could induce the immune tolerance and escape through binding with its ligand PVR. Blockade of TIGIT/PVR is considered as a promising strategy in cancer immunotherapy. However, to facilitate the design of inhibitors targeting TIGIT/PVR, the structural characteristics and binding mechanism still need to be further studied.Methods: In this study, molecular dynamics (MD) simulations and in silico mutagenesis were used to analyze the interaction between TIGIT and its ligand PVR. Then, PVR mutants were designed and their activities were determined by using TIGIT overexpressed Jurkat cells.Results: The results suggested that the loops of PVR (CC ' loop, C ' C '' loop, and FG loop) underwent a large intra-molecular rearrangement, and more hydrogen bond crosslinking between PVR and TIGIT were formed during MD simulations. The potential residues for PVR to interact with TIGIT were identified and utilized to predict high affinity PVR mutants. Through the biological activity evaluation, four PVR mutants ((PVR)S72W, (PVR)S72R, (PVR)G131V and (PVR)S132Q) with enhanced affinity to TIGIT were discovered, which could elicit more potent inhibitory effects compared with the wild type PVR.Conclusions: The MD simulations analysis provided new insights into the TIGIT/PVR interaction model, and the identified PVR mutants ((PVR)S72W, (PVR)S72R, (PVR)G131V and (PVR)S132Q) could serve as new candidates for immunotherapy to block TIGIT/PVR.
...2.Integrative analysis of bulk and single-cell gene expression profiles to identify tumor-associated macrophage-derived CCL18 as a therapeutic target of esophageal squamous cell carcinoma.
- 关键词:
- CCL18; Cell-cell interaction; Esophageal squamous cell carcinoma; Tumor associated macrophage; Tumor microenvironment
- Sui, Xinghua;Chen, Chunxia;Zhou, Xiuman;Wen, Xueyan;Shi, Chao;Chen, Guanyu;Liu, Juan;He, Zhuoying;Yao, Yongjie;Li, Yin;Gao, Yanfeng
- 《Journal of experimental & clinical cancer research : CR》
- 2023年
- 42卷
- 1期
- 期刊
BACKGROUND: Esophageal squamous cell carcinoma (ESCC) is a common gastrointestinal malignancy with poor patient prognosis. Current treatment for ESCC, including immunotherapy, is only beneficial for a small subset of patients. Better characterization of the tumor microenvironment (TME) and the development of novel therapeutic targets are urgently needed.; METHODS: In the present study, we hypothesized that integration of single-cell transcriptomic sequencing and large microarray sequencing of ESCC biopsies would reveal the key cell subtypes and therapeutic targets that determine the prognostic and tumorigenesis of ESCC. We characterized the gene expression profiles, gene sets enrichment, and the TME landscape of a microarray cohort including 84 ESCC tumors and their paired peritumor samples. We integrated single-cell transcriptomic sequencing and bulk microarray sequencing of ESCC to reveal key cell subtypes and druggable targets that determine the prognostic and tumorigenesis of ESCC. We then designed and screened a blocking peptide targeting Chemokine C-C motif ligand 18 (CCL18) derived from tumor associated macrophages and validated its potency by MTT assay. The antitumor activity of CCL18 blocking peptide was validated in vivo by using 4-nitroquinoline-1-oxide (4-NQO) induced spontaneous ESCC mouse model.; RESULTS: Comparative gene expression and cell-cell interaction analyses revealed dysregulated chemokine and cytokine pathways during ESCC carcinogenesis. TME deconvolution and cell interaction analyses allow us to identify the chemokine CCL18 secreted by tumor associated macrophages could promote tumor cell proliferation via JAK2/STAT3 signaling pathway and lead to poor prognosis of ESCC. The peptide Pep3 could inhibit the proliferation of EC-109 cells promoted by CCL18 and significantly restrain the tumor progression in 4-NQO-induced spontaneous ESCC mouse model.; CONCLUSIONS: For the first time, we discovered and validated that CCL18 blockade could significantly prevent ESCC progression. Our study revealed the comprehensive cell-cell interaction network in the TME of ESCC and provided novel therapeutic targets and strategies to ESCC treatment. © 2023. The Author(s).
...3.In vitro assay for the development of small molecule inhibitors targeting PD-1/PD-L1
- Zhai Wenjie;Zhou Xiuman;Du Jiangfeng;Gao Yanfeng;
- 0年
- 卷
- 期
- 期刊
4.Identification of novel P2X7R antagonists by using structure-based virtual screening and cell-based assays
- 关键词:
- antagonist; homology model; molecular docking; virtual screening;P2X(7) RECEPTOR EXPRESSION; PURINERGIC RECEPTORS; SCORING FUNCTIONS;CANCER; ACTIVATION; DOCKING; DERIVATIVES; MIGRATION; INVASION; RELEASE
- Zhao, Yunshuo;Chen, Xiaotong;Lyu, Sifan;Ding, Zhe;Wu, Yahong;Gao, Yanfeng;Du, Jiangfeng
- 《CHEMICAL BIOLOGY & DRUG DESIGN》
- 2021年
- 98卷
- 1期
- 期刊
In the tumor microenvironment, inflammation and necrosis cause the accumulations of ATP extracellularly, and high concentrations of ATP can activate P2X7 receptors (P2X7R), which leads to the influx of Na+, K+, or Ca2+ into cells and trigger the downstream signaling pathways. P2X7R is a relatively unique ligand-gated ion channel, which is over-expressed in most tumor cells. The activated P2X7R facilitates the tumor growth, invasion, and metastasis. Inhibition of the P2X7R activation can be applied as a potential anti-tumor therapy strategy. There are currently no anti-tumor agents against P2X7R, though several P2X7R antagonists for indications such as anti-inflammatory and anti-depression were reported. In this study, we combined homology modeling (HM), virtual screening, and EB intake assay to characterize the structural features of P2X7R and identify several novel antagonists, which were chemically different from any other known P2X7R antagonists. The identified antagonists could effectively prevent the pore opening of P2X7R with IC50 values ranging from 29.14 to 35.34 mu M. HM model showed the area between ATP-binding pocket, and allosteric sides were hydrophobic and suitable for small molecule interaction. Molecular docking indicated a universal binding mode, of which residues R294 and K311 were used as hydrogen bond donors to participate in antagonist interactions. The binding mode can potentially be utilized for inhibitor optimization for increased affinity, and the identified antagonists can be further tested for anti-cancer activity or may serve as chemical agents to study P2X7R related functions.
...5.Identification of Phelligridin-Based Compounds as Novel Human CD73 Inhibitors
- 关键词:
- Binding energy;Drug products;Hydrogen bonds;Lead compounds;Antitumor immunity;Binding affinities;Clinical application;Computer-aided drug discovery;Drug candidates;Enzymatic activities;Stacking interaction;Virtual Screening
- Lyu, Sifan;Zhao, Yunshuo;Zeng, Xiao;Chen, Xiaotong;Meng, Qingqing;Ding, Zhe;Zhao, Wenshan;Qi, Yuanming;Gao, Yanfeng;Du, Jiangfeng
- 《Journal of Chemical Information and Modeling》
- 2021年
- 61卷
- 3期
- 期刊
As an emerging immune checkpoint, CD73 has received more attention in the past decade. Inhibition of CD73 enzymatic activity can enhance antitumor immunity. Several CD73 inhibitors have been identified by in vitro assays in recent years, but they remain premature for clinical application, indicating that more novel CD73 inhibitors should be studied. Herein, we aimed to identify novel CD73 inhibitors that hopefully are suitable drug candidates by using computer-aided drug discovery and enzymatic-based assays. Five-hundred molecules with high binding affinity were retrieved from the Chemdiv-Plus database by using a structure-based virtual screening approach. Then, we analyzed the drug properties of these molecules and obtained 68 small molecules based on the oral noncentral nervous system (CNS) drug profile. The inhibition rates of these molecules against CD73 enzymatic activities were determined at a concentration of 100 μM, and 20 molecules had an inhibition rate greater than 20%, eight of which were dose-dependent, with IC50 values of 6.72-172.1 μM. Among the screening hits, phelligridin-based compounds had the best experimental inhibition values. Modeling studies indicate that the phelligridin group is sandwiched by the rings of F417 and F500 residues. The identified inhibitors have a molecular weight of approximately 500 Dal and are predicted to form primarily hydrogen bonds with CD73 in addition to hydrophobic stacking interactions. In conclusion, novel inhibitors with satisfactory drug properties may serve as lead compounds for the development of CD73-targeting drugs, and the binding modes may provide insight for phelligridin-based drug design.©...6.Tryptophan 2,3-dioxygenase 2 controls M2 macrophages polarization to promote esophageal squamous cell carcinoma progression via AKT/GSK3 beta/IL-8 signaling pathway
- 关键词:
- Tryptophan 2,3-dioxygenase 2; M2 macrophage; Esophageal squamous cellcarcinoma; IL-8; KYN;CANCER; THERAPY; PROLIFERATION; INHIBITION; CHALLENGES; RESISTANCE;GLIOMA; COLON; IDO1
- Zhao, Yumiao;Sun, Jiaxin;Li, Yin;Zhou, Xiuman;Zhai, Wenjie;Wu, Yahong;Chen, Guanyu;Gou, Shanshan;Sui, Xinghua;Zhao, Wenshan;Qiu, Lu;Yao, Yongjie;Sun, Yixuan;Chen, Chunxia;Qi, Yuanming;Gao, Yanfeng
- 《ACTA PHARMACEUTICA SINICA B》
- 2021年
- 11卷
- 9期
- 期刊
Tryptophan 2,3-dioxygnease 2 (TDO2) is specific for metabolizing tryptophan to kynurenine (KYN), which plays a critical role in mediating immune escape of cancer. Although accumulating evidence demonstrates that TDO2 overexpression is implicated in the development and progression of multiple cancers, its tumor-promoting role in esophageal squamous cell carcinoma (ESCC) remains unclear. Here, we observed that TDO2 was overexpressed in ESCC tissues and correlated significantly with lymph node metastasis, advanced clinical stage, and unfavorable prognosis. Functional experiments showed that TDO2 promoted tumor cell proliferation, migration, and colony formation, which could be prevented by inhibition of TDO2 and aryl hydrocarbon receptor (AHR). Further experimentation demonstrated that TDO2 could promote the tumor growth of KYSE150 tumor-bearing model, tumor burden of C57BL/6 mice with ESCC induced by 4-NQO, enhance the expression of phosphorylated AKT, with subsequent phosphorylation of GSK3b, and polarization of M2 macrophages by upregulating interleukin-8 (IL-8) to accelerate tumor progression in the tumor microenvironment (TME). Collectively, our results discovered that TDO2 could upregulate IL-8 through AKT/GSK3 beta to direct the polarization of M2 macrophages in ESCC, and suggested that TDO2 could represent as an attractive therapeutic target and prognostic marker to ESCC. (C) 2021 Chinese Pharmaceutical Association and Institute of Materia Medica, Chinese Academy of Medical Sciences. Production and hosting by Elsevier B.V.
...7.POTN: A Human Leukocyte Antigen-A2 Immunogenic Peptides Screening Model and Its Applications in Tumor Antigens Prediction
- 关键词:
- neoantigen prediction; peptides; immunogenicity; prediction model;cancer immunotherapy;CYTOLYTIC T-LYMPHOCYTES; CELL EPITOPE; IDENTIFICATION; CANCER; SEQUENCE;DATABASE; SURFACE; SITES; ACID; NEOANTIGENS
- Meng, Qingqing;Wu, Yahong;Sui, Xinghua;Meng, Jingjie;Wang, Tingting;Lin, Yan;Wang, Zhiwei;Zhou, Xiuman;Qi, Yuanming;Du, Jiangfeng;Gao, Yanfeng
- 《FRONTIERS IN IMMUNOLOGY》
- 2020年
- 11卷
- 期
- 期刊
Whole genome/exome sequencing data for tumors are now abundant, and many tumor antigens, especially mutant antigens (neoantigens), have been identified for cancer immunotherapy. However, only a small fraction of the peptides from these antigens induce cytotoxic T cell responses. Therefore, efficient methods to identify these antigenic peptides are crucial. The current models of major histocompatibility complex (MHC) binding and antigenic prediction are still inaccurate. In this study, 360 9-mer peptides with verified immunological activity were selected to construct a prediction of tumor neoantigen (POTN) model, an immunogenic prediction model specifically for the human leukocyte antigen-A2 allele. Based on the physicochemical properties of amino acids, such as the residue propensity, hydrophobicity, and organic solvent/water, we found that the predictive capability of POTN is superior to that of the prediction programs SYPEITHI, IEDB, and NetMHCpan 4.0. We used POTN to screen peptides for the cancer-testis antigen located on the X chromosome, and we identified several peptides that may trigger immunogenicity. We synthesized and measured the binding affinity and immunogenicity of these peptides and found that the accuracy of POTN is higher than that of NetMHCpan 4.0. Identifying the properties related to the T cell response or immunogenicity paves the way to understanding the MHC/peptide/T cell receptor complex. In conclusion, POTN is an efficient prediction model for screening high-affinity immunogenic peptides from tumor antigens, and thus provides useful information for developing cancer immunotherapy.
...8.Characterization of CD103(+) CD8(+) tissue-resident T cells in esophageal squamous cell carcinoma: may be tumor reactive and resurrected by anti-PD-1 blockade
- 关键词:
- CD103; Tissue-resident T cells; Tumor-infiltrating lymphocytes;Esophageal squamous cell carcinoma;IMMUNE CELLS; E-CADHERIN; LYMPHOCYTES; CANCER; IMMUNOTHERAPY;CHEMOTHERAPY; EFFECTOR; LUNG; CHEMORADIOTHERAPY; MULTICENTER
- Han, Lu;Gao, Quan-Li;Zhou, Xiu-Man;Shi, Chao;Chen, Guan-Yu;Song, Yong-Ping;Yao, Yong-Jie;Zhao, Yu-Miao;Wen, Xue-Yan;Liu, Shi-Lei;Qi, Yuan-Ming;Gao, Yan-Feng
- 《CANCER IMMUNOLOGY IMMUNOTHERAPY》
- 2020年
- 69卷
- 8期
- 期刊
Though therapy that promotes anti-tumor response about CD8(+) tumor-infiltrating lymphocytes (TILs) has shown great potential, clinical responses to CD8(+) TILs immunotherapy vary considerably, largely because of different subpopulation of CD8(+) TILs exhibiting different biological characters. To define the relationship between subpopulation of CD8(+) TILs and the outcome of antitumor reaction, the phenotype and function of CD103(+) CD8(+) TILs in esophageal squamous cell carcinoma (ESCC) were investigated. CD103(+) CD8(+) TILs were presented in ESCC, which displayed phenotype of tissue-resident memory T cells and exhibited high expression of immune checkpoints (PD-1, TIM-3). CD103(+) CD8(+) TILs were positively associated with the overall survivals of ESCC patients. This population of cells elicited potent proliferation and cytotoxic cytokine secretion potential. In addition, CD103(+) CD8(+) TILs were elicited potent anti-tumor immunity after anti-PD-1 blockade and were not affected by chemotherapy. This study emphasized the feature of CD103(+) CD8(+) TILs in immune response and identified potentially new targets in ESCC patients.
...9.Blocking of the PD-1/PD-L1 interaction by a novel cyclic peptide inhibitor for cancer immunotherapy
- 关键词:
- PD-1; PD-L1; cancer immunotherapy; immune checkpoint blockade; cyclicpeptide; phage display; CD8(+)T cell;SMALL-MOLECULE INHIBITORS; CHECKPOINT BLOCKADE; PD-1 BLOCKADE; T-CELLS;DRUG; ANTIBODY; PEMBROLIZUMAB; THERAPEUTICS; BINDING; LIGAND
- Zhai, Wenjie;Zhou, Xiuman;Zhai, Mingxia;Li, Wanqiong;Ran, Yunhui;Sun, Yixuan;Du, Jiangfeng;Zhao, Wenshan;Xing, Lingxiao;Qi, Yuanming;Gao, Yanfeng
- 《SCIENCE CHINA-LIFE SCIENCES》
- 2020年
- 64卷
- 4期
- 期刊
The interaction of PD-1/PD-L1 allows tumor cells to escape from immune surveillance. Clinical success of the antibody drugs has proven that blockade of PD-1/PD-L1 pathway is a promising strategy for cancer immunotherapy. Here, we developed a cyclic peptide C8 by using Ph.D.-C7C phage display technology. C8 showed high binding affinity with hPD-1 and could effectively interfere the interaction of PD-1/PD-L1. Furthermore, C8 could stimulate CD8(+)T cell activation in human peripheral blood mononuclear cells (PBMCs). We also observed that C8 could suppress tumor growth in CT26 and B16-OVA, as well as anti-PD-1 antibody resistant B16 mouse model. CD8 T cells infiltration significantly increased in tumor microenvironment, and IFN-gamma secretion by CD8(+)T cells in draining lymph nodes also increased. Simultaneously, we exploited T cells depletion models and confirmed that C8 exerted anti-tumor effects via activating CD8(+)T cells dependent manner. The interaction model of C8 with hPD-1 was simulated and confirmed by alanine scanning. In conclusion, C8 shows anti-tumor capability by blockade of PD-1/PD-L1 interaction, and C8 may provide an alternative candidate for cancer immunotherapy.
...10.CD47/Sirpα blocking peptide identification and synergistic effect with irradiation for cancer immunotherapy
- Hongfei Wang;Yixuan Sun;Xiuman Zhou;Chunxia Chen;Ling Jiao;Wanqiong Li;Shanshan Gou;Yanying Li;Jiangfeng Du;Guanyu Chen;Wenjie Zhai;Yahong Wu;Yuanming Qi;Yanfeng Gao;
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