食管鳞癌组织免疫细胞亚群时空分布和靶向突变抗原的免疫干预研究

项目来源

国家自然科学基金(NSFC)

项目主持人

高艳锋

项目受资助机构

郑州大学

立项年度

2016

立项时间

未公开

项目编号

U1604286

项目级别

国家级

研究期限

未知 / 未知

受资助金额

215.00万元

学科

联合基金领域-人口与健康领域

学科代码

L-L02

基金类别

联合基金项目-重点支持项目-NSFC-河南联合基金

关键词

食管鳞癌 ; 突变抗原 ; 免疫微环境 ; 免疫治疗 ; Esophageal squamous cell carcinoma ; immune microenvironment ; neoantigen ; immunotherapy

参与者

李印;石超;吴亚红;孙海波;郑燕;刘士磊;闫中义;周秀曼;王鸿飞

参与机构

河南大学;北京大学

项目标书摘要:食管癌是世界上常见的导致死亡的六大恶性肿瘤之一,太行山区是全世界高发的地区之一,并且以食管鳞癌为主,因此,研究其发病机制和防治策略具有重要意义。在早期的病因学研究结果指导下,该地区的生活环境和生活习惯得到了很大的改善,但发病率仍处于一个很高的水平。近年来外显子测序的结果表明食管鳞癌组织中存在大量的高频突变,这些突变的积累使得该地区食管癌的防控形势更加严峻。因此,研究食管鳞癌组织的微环境显得至关重要。本项目拟通过高通量测序等方法系统的研究食管鳞癌组织免疫细胞亚群的时空分布规律,发现对于食管鳞癌的发生起关键作用的免疫细胞亚群和相关分子,并且分析这些因素与病人预后之间的关系,发现重要的干预靶点;此外,通过对食管鳞癌组织高频突变靶点的分析,发现和鉴定突变抗原中潜在的免疫优势表位;最后,通过小鼠诱发食管癌模型探讨免疫干预的可行性。本项目将为食管鳞癌的诊断、预后评价和免疫干预提供重要的理论依据。

Application Abstract: Esophageal cancer is the sixth most lethal cancer worldwide.The highest incidences are in the Taihang Mountains of north-central China,in which most cases are esophageal squamous cell carcinoma(ESCC).Therefore,it is very important to study the development and prevention strategy.According to the research works performed during the last decades,the environmental factor and dietary habits were changed a lot,along with the decrease of the incidence ratio.But the incidence ratio is still very high.Recently,the research work by using whole-exome sequencing indicated that there are a lot of high frequency mutations in ESCC.The accumulation of these mutations make it more urgent to develop novel prevention strategies.Therefore,it is very important to elucidate the microenvironment of ESCC.In this project,we proposed to study the spatiotemporal dynamics of the intratumoral immune cells,discover the key immune cell subsets and related molecule,and analyze the relationship between these dynamics and the patients'prognosis.By these work,the immune prevention targets will be identified.We are also planned to analyze the mutation targets to identify the potential epitopes.Finally,the immunotherapy impact of these targets and epitopes will be investigated in mouse model.Our project will provide fundamental evidence to the diagnosis,prognosis evaluation and immunotherapy of ESCC.

项目受资助省

河南省

项目结题报告(全文)

食管鳞癌是中国高发的恶性肿瘤之一,解析其微环境中细胞亚群的动态变化、以及寻找潜在的治疗靶标及开发新的治疗策略至关重要。本项目通过对食管鳞癌临床样本的表达谱芯片分析,确定了主要的43种细胞亚群的动态变化,以及与病理分期、生存期和预后之间的关系。结果表明,巨噬细胞可以通过趋化因子CCL18与受体PITPNM3作用促进食管鳞癌的进展;TDO2通过激活AKT/GSK-3β/IL-8信号通路促进增殖、迁移和集落形成并促进M2巨噬细胞极化;食管鳞癌组织中激活的M1巨噬细胞可以通过分泌IL-36α,刺激NK细胞和CD8+T细胞的活化和浸润,抑制肿瘤的进展。食管鳞癌组织中存在一群CD103+组织居留CD8+T细胞,CD103+CD8+TILs与ESCC患者的整体生存呈正相关;该群细胞高表达PD-1/TIGIT/LAG-3/TIM-3等免疫检查点分子,与PD-1抗体的疗效相关。利用噬菌体展示肽库,筛选得到了针对PD-1和LAG-3的环肽阻断剂以及针对TIGIT的D肽阻断剂;CD47的靶向肽可阻断CD47与SIRPα相互作用,利用肿瘤组织中巨噬细胞的吞噬作用,与放疗联合起到协同抗肿瘤作用。通过对外显子测序数据的分析,我们针对食管鳞癌中高频突变抗原,筛选得到了针对食管鳞癌组织高频突变位点的HLA-A2限制性新表位TP53-G245S236-246 和TP53-G245S236-246,其在体内外诱导较强的免疫活性。构建了针对HLA-A2表位肽的预测方法POTN,与现有的多个方法相比,预测的准确率得到明显的提升。

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  • 1.Computer-aided design of PVR mutants with enhanced binding affinity to TIGIT

    • 关键词:
    • Cancer immunotherapy; TIGIT; PVR; Molecular dynamics; Mutagenesis; Drugdesign
    • Zhou, Xiaowen;Du, Jiangfeng;Zhou, Xiuman;Niu, Xiaoshuang;Li, Wanqiong;Chen, Chunxia;Lv, Sifan;Wu, Aijun;Gou, Shanshan;Sun, Yixuan;Zhai, Wenjie;Qiu, Lu;Qi, Yuanming;Zhao, Wenshan;Gao, Yanfeng
    • 《CELL COMMUNICATION AND SIGNALING》
    • 2021年
    • 19卷
    • 1期
    • 期刊

    Background: TIGIT, as a novel immune checkpoint molecule involved in T cell and NK cell anergy, could induce the immune tolerance and escape through binding with its ligand PVR. Blockade of TIGIT/PVR is considered as a promising strategy in cancer immunotherapy. However, to facilitate the design of inhibitors targeting TIGIT/PVR, the structural characteristics and binding mechanism still need to be further studied.Methods: In this study, molecular dynamics (MD) simulations and in silico mutagenesis were used to analyze the interaction between TIGIT and its ligand PVR. Then, PVR mutants were designed and their activities were determined by using TIGIT overexpressed Jurkat cells.Results: The results suggested that the loops of PVR (CC ' loop, C ' C '' loop, and FG loop) underwent a large intra-molecular rearrangement, and more hydrogen bond crosslinking between PVR and TIGIT were formed during MD simulations. The potential residues for PVR to interact with TIGIT were identified and utilized to predict high affinity PVR mutants. Through the biological activity evaluation, four PVR mutants ((PVR)S72W, (PVR)S72R, (PVR)G131V and (PVR)S132Q) with enhanced affinity to TIGIT were discovered, which could elicit more potent inhibitory effects compared with the wild type PVR.Conclusions: The MD simulations analysis provided new insights into the TIGIT/PVR interaction model, and the identified PVR mutants ((PVR)S72W, (PVR)S72R, (PVR)G131V and (PVR)S132Q) could serve as new candidates for immunotherapy to block TIGIT/PVR.

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  • 2.Integrative analysis of bulk and single-cell gene expression profiles to identify tumor-associated macrophage-derived CCL18 as a therapeutic target of esophageal squamous cell carcinoma.

    • 关键词:
    • CCL18; Cell-cell interaction; Esophageal squamous cell carcinoma; Tumor associated macrophage; Tumor microenvironment
    • Sui, Xinghua;Chen, Chunxia;Zhou, Xiuman;Wen, Xueyan;Shi, Chao;Chen, Guanyu;Liu, Juan;He, Zhuoying;Yao, Yongjie;Li, Yin;Gao, Yanfeng
    • 《Journal of experimental & clinical cancer research : CR》
    • 2023年
    • 42卷
    • 1期
    • 期刊

    BACKGROUND: Esophageal squamous cell carcinoma (ESCC) is a common gastrointestinal malignancy with poor patient prognosis. Current treatment for ESCC, including immunotherapy, is only beneficial for a small subset of patients. Better characterization of the tumor microenvironment (TME) and the development of novel therapeutic targets are urgently needed.; METHODS: In the present study, we hypothesized that integration of single-cell transcriptomic sequencing and large microarray sequencing of ESCC biopsies would reveal the key cell subtypes and therapeutic targets that determine the prognostic and tumorigenesis of ESCC. We characterized the gene expression profiles, gene sets enrichment, and the TME landscape of a microarray cohort including 84 ESCC tumors and their paired peritumor samples. We integrated single-cell transcriptomic sequencing and bulk microarray sequencing of ESCC to reveal key cell subtypes and druggable targets that determine the prognostic and tumorigenesis of ESCC. We then designed and screened a blocking peptide targeting Chemokine C-C motif ligand 18 (CCL18) derived from tumor associated macrophages and validated its potency by MTT assay. The antitumor activity of CCL18 blocking peptide was validated in vivo by using 4-nitroquinoline-1-oxide (4-NQO) induced spontaneous ESCC mouse model.; RESULTS: Comparative gene expression and cell-cell interaction analyses revealed dysregulated chemokine and cytokine pathways during ESCC carcinogenesis. TME deconvolution and cell interaction analyses allow us to identify the chemokine CCL18 secreted by tumor associated macrophages could promote tumor cell proliferation via JAK2/STAT3 signaling pathway and lead to poor prognosis of ESCC. The peptide Pep3 could inhibit the proliferation of EC-109 cells promoted by CCL18 and significantly restrain the tumor progression in 4-NQO-induced spontaneous ESCC mouse model.; CONCLUSIONS: For the first time, we discovered and validated that CCL18 blockade could significantly prevent ESCC progression. Our study revealed the comprehensive cell-cell interaction network in the TME of ESCC and provided novel therapeutic targets and strategies to ESCC treatment. © 2023. The Author(s).

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  • 4.Identification of novel P2X7R antagonists by using structure-based virtual screening and cell-based assays

    • 关键词:
    • antagonist; homology model; molecular docking; virtual screening;P2X(7) RECEPTOR EXPRESSION; PURINERGIC RECEPTORS; SCORING FUNCTIONS;CANCER; ACTIVATION; DOCKING; DERIVATIVES; MIGRATION; INVASION; RELEASE
    • Zhao, Yunshuo;Chen, Xiaotong;Lyu, Sifan;Ding, Zhe;Wu, Yahong;Gao, Yanfeng;Du, Jiangfeng
    • 《CHEMICAL BIOLOGY & DRUG DESIGN》
    • 2021年
    • 98卷
    • 1期
    • 期刊

    In the tumor microenvironment, inflammation and necrosis cause the accumulations of ATP extracellularly, and high concentrations of ATP can activate P2X7 receptors (P2X7R), which leads to the influx of Na+, K+, or Ca2+ into cells and trigger the downstream signaling pathways. P2X7R is a relatively unique ligand-gated ion channel, which is over-expressed in most tumor cells. The activated P2X7R facilitates the tumor growth, invasion, and metastasis. Inhibition of the P2X7R activation can be applied as a potential anti-tumor therapy strategy. There are currently no anti-tumor agents against P2X7R, though several P2X7R antagonists for indications such as anti-inflammatory and anti-depression were reported. In this study, we combined homology modeling (HM), virtual screening, and EB intake assay to characterize the structural features of P2X7R and identify several novel antagonists, which were chemically different from any other known P2X7R antagonists. The identified antagonists could effectively prevent the pore opening of P2X7R with IC50 values ranging from 29.14 to 35.34 mu M. HM model showed the area between ATP-binding pocket, and allosteric sides were hydrophobic and suitable for small molecule interaction. Molecular docking indicated a universal binding mode, of which residues R294 and K311 were used as hydrogen bond donors to participate in antagonist interactions. The binding mode can potentially be utilized for inhibitor optimization for increased affinity, and the identified antagonists can be further tested for anti-cancer activity or may serve as chemical agents to study P2X7R related functions.

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  • 5.Identification of Phelligridin-Based Compounds as Novel Human CD73 Inhibitors

    • 关键词:
    • Binding energy;Drug products;Hydrogen bonds;Lead compounds;Antitumor immunity;Binding affinities;Clinical application;Computer-aided drug discovery;Drug candidates;Enzymatic activities;Stacking interaction;Virtual Screening
    • Lyu, Sifan;Zhao, Yunshuo;Zeng, Xiao;Chen, Xiaotong;Meng, Qingqing;Ding, Zhe;Zhao, Wenshan;Qi, Yuanming;Gao, Yanfeng;Du, Jiangfeng
    • 《Journal of Chemical Information and Modeling》
    • 2021年
    • 61卷
    • 3期
    • 期刊

    As an emerging immune checkpoint, CD73 has received more attention in the past decade. Inhibition of CD73 enzymatic activity can enhance antitumor immunity. Several CD73 inhibitors have been identified by in vitro assays in recent years, but they remain premature for clinical application, indicating that more novel CD73 inhibitors should be studied. Herein, we aimed to identify novel CD73 inhibitors that hopefully are suitable drug candidates by using computer-aided drug discovery and enzymatic-based assays. Five-hundred molecules with high binding affinity were retrieved from the Chemdiv-Plus database by using a structure-based virtual screening approach. Then, we analyzed the drug properties of these molecules and obtained 68 small molecules based on the oral noncentral nervous system (CNS) drug profile. The inhibition rates of these molecules against CD73 enzymatic activities were determined at a concentration of 100 μM, and 20 molecules had an inhibition rate greater than 20%, eight of which were dose-dependent, with IC50 values of 6.72-172.1 μM. Among the screening hits, phelligridin-based compounds had the best experimental inhibition values. Modeling studies indicate that the phelligridin group is sandwiched by the rings of F417 and F500 residues. The identified inhibitors have a molecular weight of approximately 500 Dal and are predicted to form primarily hydrogen bonds with CD73 in addition to hydrophobic stacking interactions. In conclusion, novel inhibitors with satisfactory drug properties may serve as lead compounds for the development of CD73-targeting drugs, and the binding modes may provide insight for phelligridin-based drug design.
    ©

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  • 6.Tryptophan 2,3-dioxygenase 2 controls M2 macrophages polarization to promote esophageal squamous cell carcinoma progression via AKT/GSK3 beta/IL-8 signaling pathway

    • 关键词:
    • Tryptophan 2,3-dioxygenase 2; M2 macrophage; Esophageal squamous cellcarcinoma; IL-8; KYN;CANCER; THERAPY; PROLIFERATION; INHIBITION; CHALLENGES; RESISTANCE;GLIOMA; COLON; IDO1
    • Zhao, Yumiao;Sun, Jiaxin;Li, Yin;Zhou, Xiuman;Zhai, Wenjie;Wu, Yahong;Chen, Guanyu;Gou, Shanshan;Sui, Xinghua;Zhao, Wenshan;Qiu, Lu;Yao, Yongjie;Sun, Yixuan;Chen, Chunxia;Qi, Yuanming;Gao, Yanfeng
    • 《ACTA PHARMACEUTICA SINICA B》
    • 2021年
    • 11卷
    • 9期
    • 期刊

    Tryptophan 2,3-dioxygnease 2 (TDO2) is specific for metabolizing tryptophan to kynurenine (KYN), which plays a critical role in mediating immune escape of cancer. Although accumulating evidence demonstrates that TDO2 overexpression is implicated in the development and progression of multiple cancers, its tumor-promoting role in esophageal squamous cell carcinoma (ESCC) remains unclear. Here, we observed that TDO2 was overexpressed in ESCC tissues and correlated significantly with lymph node metastasis, advanced clinical stage, and unfavorable prognosis. Functional experiments showed that TDO2 promoted tumor cell proliferation, migration, and colony formation, which could be prevented by inhibition of TDO2 and aryl hydrocarbon receptor (AHR). Further experimentation demonstrated that TDO2 could promote the tumor growth of KYSE150 tumor-bearing model, tumor burden of C57BL/6 mice with ESCC induced by 4-NQO, enhance the expression of phosphorylated AKT, with subsequent phosphorylation of GSK3b, and polarization of M2 macrophages by upregulating interleukin-8 (IL-8) to accelerate tumor progression in the tumor microenvironment (TME). Collectively, our results discovered that TDO2 could upregulate IL-8 through AKT/GSK3 beta to direct the polarization of M2 macrophages in ESCC, and suggested that TDO2 could represent as an attractive therapeutic target and prognostic marker to ESCC. (C) 2021 Chinese Pharmaceutical Association and Institute of Materia Medica, Chinese Academy of Medical Sciences. Production and hosting by Elsevier B.V.

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  • 7.POTN: A Human Leukocyte Antigen-A2 Immunogenic Peptides Screening Model and Its Applications in Tumor Antigens Prediction

    • 关键词:
    • neoantigen prediction; peptides; immunogenicity; prediction model;cancer immunotherapy;CYTOLYTIC T-LYMPHOCYTES; CELL EPITOPE; IDENTIFICATION; CANCER; SEQUENCE;DATABASE; SURFACE; SITES; ACID; NEOANTIGENS
    • Meng, Qingqing;Wu, Yahong;Sui, Xinghua;Meng, Jingjie;Wang, Tingting;Lin, Yan;Wang, Zhiwei;Zhou, Xiuman;Qi, Yuanming;Du, Jiangfeng;Gao, Yanfeng
    • 《FRONTIERS IN IMMUNOLOGY》
    • 2020年
    • 11卷
    • 期刊

    Whole genome/exome sequencing data for tumors are now abundant, and many tumor antigens, especially mutant antigens (neoantigens), have been identified for cancer immunotherapy. However, only a small fraction of the peptides from these antigens induce cytotoxic T cell responses. Therefore, efficient methods to identify these antigenic peptides are crucial. The current models of major histocompatibility complex (MHC) binding and antigenic prediction are still inaccurate. In this study, 360 9-mer peptides with verified immunological activity were selected to construct a prediction of tumor neoantigen (POTN) model, an immunogenic prediction model specifically for the human leukocyte antigen-A2 allele. Based on the physicochemical properties of amino acids, such as the residue propensity, hydrophobicity, and organic solvent/water, we found that the predictive capability of POTN is superior to that of the prediction programs SYPEITHI, IEDB, and NetMHCpan 4.0. We used POTN to screen peptides for the cancer-testis antigen located on the X chromosome, and we identified several peptides that may trigger immunogenicity. We synthesized and measured the binding affinity and immunogenicity of these peptides and found that the accuracy of POTN is higher than that of NetMHCpan 4.0. Identifying the properties related to the T cell response or immunogenicity paves the way to understanding the MHC/peptide/T cell receptor complex. In conclusion, POTN is an efficient prediction model for screening high-affinity immunogenic peptides from tumor antigens, and thus provides useful information for developing cancer immunotherapy.

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  • 8.Characterization of CD103(+) CD8(+) tissue-resident T cells in esophageal squamous cell carcinoma: may be tumor reactive and resurrected by anti-PD-1 blockade

    • 关键词:
    • CD103; Tissue-resident T cells; Tumor-infiltrating lymphocytes;Esophageal squamous cell carcinoma;IMMUNE CELLS; E-CADHERIN; LYMPHOCYTES; CANCER; IMMUNOTHERAPY;CHEMOTHERAPY; EFFECTOR; LUNG; CHEMORADIOTHERAPY; MULTICENTER
    • Han, Lu;Gao, Quan-Li;Zhou, Xiu-Man;Shi, Chao;Chen, Guan-Yu;Song, Yong-Ping;Yao, Yong-Jie;Zhao, Yu-Miao;Wen, Xue-Yan;Liu, Shi-Lei;Qi, Yuan-Ming;Gao, Yan-Feng
    • 《CANCER IMMUNOLOGY IMMUNOTHERAPY》
    • 2020年
    • 69卷
    • 8期
    • 期刊

    Though therapy that promotes anti-tumor response about CD8(+) tumor-infiltrating lymphocytes (TILs) has shown great potential, clinical responses to CD8(+) TILs immunotherapy vary considerably, largely because of different subpopulation of CD8(+) TILs exhibiting different biological characters. To define the relationship between subpopulation of CD8(+) TILs and the outcome of antitumor reaction, the phenotype and function of CD103(+) CD8(+) TILs in esophageal squamous cell carcinoma (ESCC) were investigated. CD103(+) CD8(+) TILs were presented in ESCC, which displayed phenotype of tissue-resident memory T cells and exhibited high expression of immune checkpoints (PD-1, TIM-3). CD103(+) CD8(+) TILs were positively associated with the overall survivals of ESCC patients. This population of cells elicited potent proliferation and cytotoxic cytokine secretion potential. In addition, CD103(+) CD8(+) TILs were elicited potent anti-tumor immunity after anti-PD-1 blockade and were not affected by chemotherapy. This study emphasized the feature of CD103(+) CD8(+) TILs in immune response and identified potentially new targets in ESCC patients.

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  • 9.Blocking of the PD-1/PD-L1 interaction by a novel cyclic peptide inhibitor for cancer immunotherapy

    • 关键词:
    • PD-1; PD-L1; cancer immunotherapy; immune checkpoint blockade; cyclicpeptide; phage display; CD8(+)T cell;SMALL-MOLECULE INHIBITORS; CHECKPOINT BLOCKADE; PD-1 BLOCKADE; T-CELLS;DRUG; ANTIBODY; PEMBROLIZUMAB; THERAPEUTICS; BINDING; LIGAND
    • Zhai, Wenjie;Zhou, Xiuman;Zhai, Mingxia;Li, Wanqiong;Ran, Yunhui;Sun, Yixuan;Du, Jiangfeng;Zhao, Wenshan;Xing, Lingxiao;Qi, Yuanming;Gao, Yanfeng
    • 《SCIENCE CHINA-LIFE SCIENCES》
    • 2020年
    • 64卷
    • 4期
    • 期刊

    The interaction of PD-1/PD-L1 allows tumor cells to escape from immune surveillance. Clinical success of the antibody drugs has proven that blockade of PD-1/PD-L1 pathway is a promising strategy for cancer immunotherapy. Here, we developed a cyclic peptide C8 by using Ph.D.-C7C phage display technology. C8 showed high binding affinity with hPD-1 and could effectively interfere the interaction of PD-1/PD-L1. Furthermore, C8 could stimulate CD8(+)T cell activation in human peripheral blood mononuclear cells (PBMCs). We also observed that C8 could suppress tumor growth in CT26 and B16-OVA, as well as anti-PD-1 antibody resistant B16 mouse model. CD8 T cells infiltration significantly increased in tumor microenvironment, and IFN-gamma secretion by CD8(+)T cells in draining lymph nodes also increased. Simultaneously, we exploited T cells depletion models and confirmed that C8 exerted anti-tumor effects via activating CD8(+)T cells dependent manner. The interaction model of C8 with hPD-1 was simulated and confirmed by alanine scanning. In conclusion, C8 shows anti-tumor capability by blockade of PD-1/PD-L1 interaction, and C8 may provide an alternative candidate for cancer immunotherapy.

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