LncRNA NBR2靶向GSDMD调控脓毒症血管内皮细胞焦亡的作用及机制研究

项目来源

国家自然科学基金(NSFC)

项目主持人

杨毅

项目受资助机构

东南大学

项目编号

81971888

立项年度

2019

立项时间

未公开

研究期限

未知 / 未知

项目级别

国家级

受资助金额

55.00万元

学科

医学科学-急重症医学-脓毒症

学科代码

H-H16-H1601

基金类别

面上项目

关键词

细胞焦亡 ; 脓毒症 ; 内皮损伤 ; gasdermin D ; 长链非编码RNA NBR2 ;

参与者

谢剑锋;白莹;刘艾然;常炜;孙骎;彭菲;谢蓉蓉;刘清香

参与机构AI

江苏省重症医学重点实验室东南大学;南京医科大学;东南大学

项目标书摘要:细胞焦亡导致血管内皮损伤是脓毒症发生发展的关键环节,遏制血管内皮焦亡是减缓脓毒症进展的重要靶点。我们通过脓毒症患者全血转录组芯片及加权基因共表达网络分析发现lncRNA NBR2与焦亡关键分子GSDMD表达显著正相关;体外诱导内皮细胞焦亡后NBR2和GSDMD显著增加;沉默NBR2明显降低GSDMD表达同时抑制内皮细胞焦亡;提示抑制NBR2表达可能是减缓脓毒症内皮细胞焦亡的有效措施。同时,基于NBR2与GSDMD可结合相同核糖核蛋白,我们推测NBR2通过结合核糖核蛋白靶向调控GSDMD基因的表达调控细胞焦亡。本研究拟通过RNA-pulldown联合蛋白质谱筛选并验证介导NBR2靶向调控GSDMD表达的蛋白;敲除该蛋白验证NBR2调控GSDMD及细胞焦亡的机制;采用CRISPR/Cas9过表达或敲除内皮细胞NBR2,在体内外明确NBR2对脓毒症内皮细胞焦亡的调控作用,为脓毒症治疗提供新靶点。

Application Abstract: Vascular endothelial injury caused by pyroptosis is the key element in the development of sepsis,and inhibition of endothelial pyroptosis is the important target in amelioration of sepsis.We have found the positive correlation of lncRNA NBR2 with the pyroptosis executor GSDMD by weighted correlation network analysis in the whole blood transcriptome array in sepsis patients.NBR2 and GSDMD was significantly elevated in induced endothelial cell pyroptosis in vitro,while the expression of GSDMD was suppressed and pyroptosis alleviated by NBR2 silence,which suggested NBR2 suppression may be the plausible strategy in mitigating endothelial cell pyroptosis.We speculated that NBR2 could recruit and guide ribonucleoprotein combination for GSDMD regulation and pyroptosis promotion.In this project,we aim to screen and demonstrate the ribonucleoprotein regulating pyroptosis mediated via NBR2 by RNA-pulldown and protein mass spectrometry;clarify the mechanism of GSDMD regulation by NBR2 gene knock-out in endothelial cells;and to elucidate the regulatory effect of NBR2 in endothelial cell pyroptosis in vitro and in vivo,by NBR2 knock-out,to proffer novel target for sepsis therapy.

项目受资助省

江苏省

项目结题报告(全文)

脓毒症是全球医疗面临的巨大挑战,是重症医学亟待解决的重大难题。血管内皮损伤则是脓毒症发生发展过程中的关键环节,而细胞焦亡导致血管内皮损伤重要机制,遏制血管内皮焦亡是减缓脓毒症发生和进展的有效策略。①我们通过体内外敲除GSDMD阻断内皮细胞焦亡,发现阻断内皮细胞焦亡能够缓解脓毒症血管内皮细胞损伤,减轻全身炎症反应和器官损伤。②通过脓毒症患者全血转录组芯片及加权基因共表达网络分析发现lncRNA NBR2与焦亡关键分子GSDMD表达显著正相关;体外诱导内皮细胞焦亡后NBR2和GSDMD显著增加;沉默NBR2明显降低GSDMD表达同时抑制内皮细胞焦亡;提示抑制NBR2表达可能是减缓脓毒症内皮细胞焦亡的有效措施。③通过RNA-pulldown联合蛋白质谱筛选并验证介导NBR2靶向调控GSDMD表达的蛋白,筛选到HNRNPK蛋白介导NBR2和GSDMD互作。④采用染色质免疫共沉淀联合qPCR检测HNRNPK蛋白与GSDMD基因的相互作用,荧光素酶报告基因检测HNRNPK对GSDMD基因转录的调控作用,通过荧光原位杂交技术和免疫荧光检测NBR2与HNRNPK蛋白亚细胞分布和共定位情况,证实tLPS刺激NBR2和HNRNPK向细胞核内移位,结合到GSDMD基因上促进GSDMD基因转录,增强GSDMD表达,为脓毒症治疗提供新靶点。课题组最新研究发现,细胞焦亡时,会释放大量细胞外泌体,这些外泌体携带了执行细胞焦亡的GSDMD。⑤探究了脓毒症患者血浆外泌体中GSDMD与患者病情及预后的相关性,结果证实,血浆外泌体中GSDMD含量与脓毒症病情及预后密切相关,为评估脓毒症患者的病情及预后提供了重要指标。

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  • 1.CircMLH3 induces mononuclear macrophage pyroptosis in sepsis by sponging miR-590-3p to regulate TAK1 expression

    • 关键词:
    • Diagnosis;Caspase-1;Expression levels;Healthy volunteers;Inflammasome;Inflammatory response;Lung injury;Overexpressions;Pathophysiological;Protective effects;Signalling pathways
    • Sun, Qin;Hu, Zihan;Huang, Wei;Liu, Xu;Wu, Xiao;Chang, Wei;Tang, Ying;Peng, Fei;Yang, Yi
    • 《International Journal of Biological Macromolecules》
    • 2024年
    • 263卷
    • 期刊

    Sepsis is a fatal syndrome characterized by uncontrolled systemic inflammatory responses. Circular RNAs (circRNAs) are involved in the modulation of various pathophysiological processes, but their potential role in sepsis has largely been unexplored. In this study, we observed differential expression of circMLH3 between healthy volunteers and septic patients, and revealed the value of circMLH3 for sepsis diagnosis and prognostic prediction. Interestingly, we discovered a correlation between the expression level of circMLH3 and the degree of pyroptosis, a critical mechanism contributing to uncontrolled inflammation in sepsis patients. Knocking down circMLH3 alleviated macrophage pyroptosis whereas overexpressing circMLH3 aggravated pyroptosis. circMLH3 regulated macrophage pyroptosis by sponging miR-590-3p and subsequently modulating TAK1 expression. Furthermore, we found that the miR-590-3p/TAK1 axis inhibited the activation of pro-caspase-1 and the NLRP3 inflammasome. miR-590-3p overexpression had a protective effect by reducing macrophage pyroptosis, thereby alleviating sepsis-induced lung injury and systemic inflammatory responses. In conclusion, our study elucidated the circMLH3/miR-590-3p/TAK1 signaling pathway and identified its role in regulating mononuclear macrophage pyroptosis, thus providing potential novel targets and strategies for sepsis diagnosis and therapy. © 2024 The Authors

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  • 2.Development and validation of a deep interpretable network for continuous acute kidney injury prediction in critically ill patients

    • 关键词:
    • Deep learning;Forecasting;Health risks;Acute kidney injury;Critical care;Critically-ill patients;External validation;Injury risk;Medical center;Model interpretations;Prediction modelling;Predictive models;Validation sets
    • Yang, Meicheng;Liu, Songqiao;Hao, Tong;Ma, Caiyun;Chen, Hui;Li, Yuwen;Wu, Changde;Xie, Jianfeng;Qiu, Haibo;Li, Jianqing;Yang, Yi;Liu, Chengyu
    • 《Artificial Intelligence in Medicine》
    • 2024年
    • 149卷
    • 期刊

    Early detection of acute kidney injury (AKI) may provide a crucial window of opportunity to prevent further injury, which helps improve clinical outcomes. This study aimed to develop a deep interpretable network for continuously predicting the 24-hour AKI risk in real-time and evaluate its performance internally and externally in critically ill patients. A total of 21,163 patients' electronic health records sourced from Beth Israel Deaconess Medical Center (BIDMC) were first included in building the model. Two external validation populations included 3025 patients from the Philips eICU Research Institute and 2625 patients from Zhongda Hospital Southeast University. A total of 152 intelligently engineered predictors were extracted on an hourly basis. The prediction model referred to as DeepAKI was designed with the basic framework of squeeze-and-excitation networks with dilated causal convolution embedded. The integrated gradients method was utilized to explain the prediction model. When performed on the internal validation set (3175 [15 %] patients from BIDMC) and the two external validation sets, DeepAKI obtained the area under the curve of 0.799 (95 % CI 0.791–0.806), 0.763 (95 % CI 0.755–0.771) and 0.676 (95 % CI 0.668–0.684) for continuousAKI prediction, respectively. For model interpretability, clinically relevant important variables contributing to the model prediction were informed, and individual explanations along the timeline were explored to show how AKI risk arose. The potential threats to generalisability in deep learning-based models when deployed across health systems in real-world settings were analyzed. © 2024

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  • 3.Endothelial Cell-Derived Extracellular Vesicles Promote Aberrant Neutrophil Trafficking and Subsequent Remote Lung Injury.

    • 关键词:
    • ALI/ARDS; endothelial cells; extracellular vesicles; neutrophils; sepsis
    • Zi, Shuang-Feng;Wu, Xiao-Jing;Tang, Ying;Liang, Yun-Peng;Liu, Xu;Wang, Lu;Li, Song-Li;Wu, Chang-De;Xu, Jing-Yuan;Liu, Tao;Huang, Wei;Xie, Jian-Feng;Liu, Ling;Chao, Jie;Qiu, Hai-Bo
    • 《Advanced science 》
    • 2024年
    • 期刊

    The development of acute respiratory distress syndrome (ARDS) in sepsis is associated with substantial morbidity and mortality. However, the molecular pathogenesis underlying sepsis-induced ARDS remains elusive. Neutrophil heterogeneity and dysfunction contribute to uncontrolled inflammation in patients with ARDS. A specific subset of neutrophils undergoing reverse transendothelial migration (rTEM), which is characterized by an activated phenotype, is implicated in the systemic dissemination of inflammation. Using single-cell RNA sequencing (scRNA-seq), it identified functionally activated neutrophils exhibiting the rTEM phenotype in the lung of a sepsis mouse model using cecal ligation and puncture. The prevalence of neutrophils with the rTEM phenotype is elevated in the blood of patients with sepsis-associated ARDS and is positively correlated with disease severity. Mechanically, scRNA-seq and proteomic analys revealed that inflamed endothelial cell (EC) released extracellular vesicles (EVs) enriched in karyopherin subunit beta-1 (KPNB1), promoting abluminal-to-luminal neutrophil rTEM. Additionally, EC-derived EVs are elevated and positively correlated with the proportion of rTEM neutrophils in clinical sepsis. Collectively, EC-derived EV is identified as a critical regulator of neutrophil rTEM, providing insights into the contribution of rTEM neutrophils to sepsis-associated lung injury. © 2024 The Author(s). Advanced Science published by Wiley‐VCH GmbH.

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  • 4.Mendelian Randomization and Transcriptomic Analysis Reveal the Protective Role of NKT Cells in Sepsis

    • 关键词:
    • natural killer T cells; sepsis; outcome; Mendelian randomization;IMMUNOSUPPRESSION; MORTALITY
    • Liu, Qingxiang;Liu, Haitao;Hu, Zihan;Zhou, Xing;Jin, Kai;Huang, Yingzi;Huang, Wei;Yang, Yi
    • 《JOURNAL OF INFLAMMATION RESEARCH》
    • 2024年
    • 17卷
    • 期刊

    Background: Sepsis is a life -threatening clinical syndrome caused by dysregulated host response to infection. The mechanism underlying sepsis -induced immune dysfunction remains poorly understood. Natural killer T (NKT) cells are cytotoxic lymphocytes that bridge the innate and adaptive immune systems, the role of NKT cells in sepsis is not entirely understood, and NKT cell cluster differences in sepsis remain unexplored. Methods: Mendelian randomization (MR) analyses were first conducted to investigate the causal relationship between side scatter area (SSC-A) on NKT cells and 28 -day mortality of septic patients. A prospective and observational study was conducted to validate the relationship between the percentage of NKT cells and 28 -day mortality of sepsis. Then, the single -cell RNA sequencing (scRNAseq) data of peripheral blood mononuclear cells (PBMCs) from healthy controls and septic patients were profiled. Results: MR analyses first revealed the protective roles of NKT cells in the 28 -day mortality of sepsis. Then, 115 septic patients were enrolled. NKT percentage was significantly higher in survivors (n = 84) compared to non -survivors (n = 31) (%, 5.00 +/- 3.46 vs 2.18 +/- 1.93, P < 0.0001). Patients with lower levels of NKT cells exhibited a significantly increased risk of 28 -day mortality. According to scRNA-seq analysis, NKT cell clusters exhibited multiple distinctive characteristics, including a distinguishing cluster defined as FOS + NKT cells, which showed a significant decrease in sepsis. Pseudo -time analysis showed that FOS + NKT cells were characterized by upregulated expression of crucial functional genes such as GZMA and CCL4 . CellChat revealed that interactions between FOS + NKT cells and adaptive immune cells including B cells and T cells were decreased in sepsis compared to healthy controls. Conclusion: Our findings indicate that NKT cells may protect against sepsis, and their percentage can predict 28 -day mortality. Additionally, we discovered a unique FOS + NKT subtype crucial in sepsis immune response, offering novel insights into its immunopathogenesis.

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  • 5.[Completion rates of bundle treatment of among patients with sepsis shock in intensive care departments of hospitals in Jiangsu Province from 2016 to 2020 years].

    • Chen, W W;Xie, J F;Yang, Y;Yang, C S
    • 《Zhonghua nei ke za zhi》
    • 2023年
    • 62卷
    • 5期
    • 期刊

    Current clinical approaches for septic shock increasingly incorporate bundle treatment, a multi-component approach that uses a collection of tests and agents to assist in the identification and treatment of infection. The present study analyzed completion rates of 3 h and 6 h bundle treatment among patients with septic shock in intensive care units (ICUs) of hospitals in Jiangsu Province from 2016 to 2020, using data from the Jiangsu Provincial Intensive Care Medical Quality Control Center. Current approaches and factors affecting treatment completion were assessed.The completion rates of 3 h and 6 h bundle treatment in ICUs of all medical units in Jiangsu Province and in ICUs of hospitals of different levels were recorded. Analyses show that the completion rate of 3 h and 6 h bundle treatment for patients with septic shock in ICUs in Jiangsu Province increased year by year from 2016 to 2020.The completion rate of 3 h bundle treatment increased from 69.82% (3 604/5 162) to 82.47% (8 915/10 775) (all P<0.001). The completion rate of 6 h bundle treatment increased from 62.69% (3 236/5 162) to 72.54% (7 816/10 775) (all P<0.001). In addition, year by year, the completion rate of 3 h bundle treatment in ICUs in tertiary hospitals increased, from 69.80% (3 596/5 152) to 82.23% (7 375/8 969), while the completion rate of 6 h bundle treatment increased from 62.69% (3 230/5 152) to 72.18% (6 474/8 969) (all P<0.001). Completion rates in secondary hospitals also increased year by year, from 80.00% (8/10) to 85.27% (1 540/1 806) for 3 h treatment and from 60.00% (6/10) to 74.31% (1 342/1 806) (all P<0.001) for 6 h treatment. Completion rates for 3 h treatment in first-tier cities (83.99% (2 099/2 499)) and second-tier cities (84.68% (3 952/4 667)) was higher than in third-tier cities (79.36% (2 864/3 609)). The completion rate of 6 h bundle treatment gradually decreased in first-line (77.19% (1 929/2 499)), second-line (74.37% (3 471/4 667)), and third-line (66.94% (2 416/3 609)) cities (all P<0.001). The data collectively show that from 2016 to 2020, the completion rate of bundle treatment in septic shock patients in ICUs in Jiangsu Province improved significantly.

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  • 6.Association between diastolic blood pressure during the first 24h and 28-day mortality in patients with septic shock: a retrospective observational study.

    • Gao, Zhiwei;Li, Cong;Chen, Hui;Chen, Dongyu;Ma, ShaoLei;Xie, Jianfeng;Wu, Changde;Liu, Ling;Yang, Yi
    • 《European journal of medical research》
    • 2023年
    • 28卷
    • 1期
    • 期刊

    BACKGROUND: Although the mean arterial pressure (MAP) target of 65mmHg was achieved, diastolic blood pressure (DBP) was still low in some septic shock patients. The effects of DBP on the prognosis and optimal target for patients with septic shock are unclear. We sought to investigate the relationship between DBP and 28-day mortalityin septic shock patients.; METHODS: In this retrospective observational study, we obtained data from the Chinese Database in Intensive Care (CDIC). We included patients with an admission diagnosis of septic shock and shock was controlled. DBP was measured every 1h, and the mean DBP during the first 24h (mDBP24h) was recorded. The primary outcome was 28-day mortality. Multivariable logistic regression determined the relationship between mDBP24h and 28-day mortality.; RESULTS: In total, 1251 patients were finally included. The 28-day mortality of included septic shock patients was 28.3%. The mDBP24h, not mSBP24h, was higher among 28-day survivors compared with non-survivors. 28-day mortality was inversely associated with mDBP24h (unadjusted OR 0.814 per 10mmHg higher mDBP24h, P=0.003), with a stepwise increase in 28-day mortality at lower mDBP24h. The 28-day mortality of patients with mDBP24h<59mmHg had an absolute risk reduction of 9.4% (P=0.001). And mDBP24h<59mmHg was the remaining high risk factor inversely associated with 28-day mortality after multivariable adjustment (adjusted OR 1.915, 95% CI 1.037-3.536, P=0.038), while mMAP24h and mSBP24h were not.; CONCLUSION: In patients with septic shock after initial resuscitation, we observed an inverse association between mDBP24h and 28-day mortality. The poor outcomes in patients with mDBP24h<59mmHg provide indirect evidence supporting a further DBP goal of 59mmHg for patients with septic shock after MAP of 65mmHg was achieved. © 2023. BioMed Central Ltd., part of Springer Nature.

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  • 7.Clinical outcome and risk factors for acute fulminant myocarditis supported by venoarterial extracorporeal membrane oxygenation:An analysis of nationwide CSECLS database in China

    • Tong Hao;Yu Jiang;Changde Wu;Chenglong Li;Chuang Chen;Jianfeng Xie;Chun Pan;Fengmei Guo;Yingzi Huang;Ling Liu;Haixiu Xie;Zhongtao Du;Xiaotong Hou;Songqiao Liu;Yi Yang;Haibo Qiu;
    • 《Int J Cardiol.2022 Sep 27:S0167-527301405-X.doi:10.1016/j.ijcard.2022.09.055.Online ahead of print》
    • 2022年
    • 期刊
  • 8.Hepatocyte growth factor protects pulmonary endothelial barrier against oxidative stress and mitochondria-dependent apoptosis

    • 关键词:
    • Hepatocyte;growth;factor;Acute;respiratory;distress;syndrome;Endothelial;barrier;mTOR/STAT3;pathway;PERMEABILITY
    • Shanshan Meng;Feiping Xia;Jingyuan Xu;Xiwen Zhang;Ming Xue;Mingyuan Gu;Fengmei Guo;Yingzi Huang;Haibo Qiu;Yi Yang
    • 《中华医学杂志:英文版》
    • 2022年
    • 135卷
    • 7期
    • 期刊

    Background:Pulmonary microvascular endothelial cells(PMVECs)were not complex,and the endothelial barrier was destroyed in the pathogenesis progress of acute lung injury(ALI)/acute respiratory distress syndrome(ARDS).P

    ...
  • 9.MiR-199a-3p-regulated alveolar macrophage-derived secretory autophagosomes exacerbate lipopolysaccharide-induced acute respiratory distress syndrome

    • Xinyi Xu;Xu Liu;Xuecheng Dong;Yi Yang;Ling Liu;
    • 《Frontiers in Cellular and Infection Microbiology》
    • 2022年
    • 12卷
    • 期刊

    PurposeAcute respiratory distress syndrome(ARDS)is a prevalent illness in intensive care units.Extracellular vesicles and particles released from activated alveolar macrophages(AMs)assist in ARDS lung injury and the inflammatory process through mechanisms that are unclear.This study investigated the role of AM-derived secretory autophagosomes(SAPs)in lung injury and microRNA(MiR)-199a-3p-regulated inflammation associated with ARDS in vitro and in a murine model.MethodsThe ARDS model in mouse was established by intratracheal LPS lipopolysaccharide(LPS)injection.The agomirs or antagomirs of MiR-199a-3p were injected into the caudal vein to figure out whether MiR-199a-3p could influence ARDS inflammation and lung injury,whereas the mimics or inhibitors of MiR-199a-3p,siRNA of Rab8a,or PAK4 inhibitor were transfected or applied to RAW264.7 cells to evaluate the mechanism of SAP release.Culture supernatants of RAW264.7 cells treated with LPS or bronchoalveolar lavage fluid from mice were collected for the isolation of SAPs.ResultsWe found that MiR-199a-3p was over-expressed in the lungs of ARDS mice.The MiR-199a-3p antagomir alleviated,whereas the MiR-199a-3p agomir exacerbated LPS-induced inflammation in mice by promoting AM-derived SAP secretion.In addition,MiR-199a-3p over-expression exacerbated LPS-induced ARDS via activating Rab8a,and Rab8a silencing significantly suppressed the promoting influence of the MiR-199a-3p mimic on SAP secretion.Furthermore,MiR-199a-3p mimic activated Rab8a by directly inhibiting PAK4 expression.ConclusionThe novel finding of this study is that MiR-199a-3p participated in the regulation of SAP secretion and the inflammatory process via targeting of PAK4/Rab8a,and is a potential therapeutic candidate for ARDS treatment.

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  • 10.肌松剂对急性呼吸窘迫综合征患者氧合影响的Meta分析

    • 关键词:
    • 呼吸窘迫综合征;成人;肌松剂;氧合指数;呼气末正压
    • 高志伟;李聪;陈辉;谢剑锋;刘玲;杨毅
    • 《中华内科杂志》
    • 2022年
    • 1期
    • 期刊

    目的系统评价肌松剂对急性呼吸窘迫综合征(ARDS)患者氧合的影响。方法联机检索“Medline”“EMBASE”“Web of science”“Cochrane central database”英文数据库及中国学术期刊全文数据库(CNKI)、中国生物医学文献数据库、万方数据库

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