Drug Action, Metabolism and Kinetics Training Grant

项目来源

美国卫生和人类服务部基金(HHS)

项目主持人

KODURI, SAILAJA

项目受资助机构

UNIVERSITY OF WASHINGTON

项目编号

2T32GM007750-41

立项年度

2019

立项时间

未公开

项目级别

国家级

研究期限

未知 / 未知

受资助金额

496563.00美元

学科

Health Disparities; Minority Health;

学科代码

未公开

基金类别

TRAINING, INSTITUTIONAL

关键词

未公开

参与者

ATKINS, WILLIAM M

参与机构

NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES

项目标书摘要:Project Summary This pre-doctoral Pharmacological Sciences Training Program (PSTP) is a cross-disciplinary program that represents a merger of research training opportunities in the Schools of Medicine (Pharmacology) and Pharmacy (Medicinal Chemistry and Pharmaceutics) at the University of Washington. The rationale for this program is that it is essential for providing in-depth training in several inter-related disciplines that are central to current and future research related to the discovery, validation and development of new drug targets and new chemical entities that will improve global health. This focus distinguishes training provided by the PSTP from other pre-doctoral training grants available at UW. The primary objective of the PSTP is to develop scientists, equipped with the necessary background in the biological and chemical sciences and training in the application of modern tools of research and instrumental techniques, to undertake and direct fundamental research related to drug action, metabolism and pharmacokinetics. Trainees follow tracks that emphasize training in four broadly defined areas: (I) cellular and molecular pharmacology, (II) structure and drug/vaccine design, (III) drug metabolism, (IV) pharmacokinetics, drug transport and delivery, which exist in the departments of Pharmacology, Medicinal Chemistry and Pharmaceutics. Didactic components involve individualized, highly multidisciplinary programs of coursework and seminars that are centered on the biological and chemical sciences. Additional program elements include a PSTP-specific journal club, a 'career' day that brings scientists from varied 'nontraditional careers' to speak with trainees, industry mentors and internships, and recently added emphasis on rigor and reproducibility. The program brings together 34 well-funded faculty members whose research emphasizes training in mechanisms and regulation of cell signaling, neuropharmacology, structural analysis of pharmacologically relevant protein-ligand interactions, mechanistic and bio- analytical aspects of drug metabolism and toxicology, pharmacogenetics, pharmacokinetics/dynamics and drug transporter function and regulation. Under-represented and disadvantaged students, who are actively recruited through a number of faculty activities, currently represent ~33% of the training cohort. In this competitive renewal of the Pharmacological Sciences National Research Service Award program, support is requested for 13 pre-doctoral trainees per year. The selection of trainees will be on a competitive basis from the pool of students in years 1-3, who are committed to research in one of the aforementioned areas.

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  • 1.Differential increase in endocannabinoid levels at the plasma and intracellular membranes

    • 关键词:
    • DEPOLARIZATION-INDUCED SUPPRESSION; DIACYLGLYCEROL LIPASE-ALPHA;PHOSPHOLIPASE-C; 2-ARACHIDONOYLGLYCEROL PRODUCTION; ENDOGENOUSCANNABINOIDS; NEURO-2A CELLS; CA2+ SIGNALS; RECEPTOR; ACTIVATION;MASTOPARAN
    • Singh, Simar;English, Anthony;Yu, Jackson;Sarroza, Dennis;Zweifel, Larry;Bruchas, Michael R.;Land, Benjamin B.;Vivas, Oscar;Stella, Nephi
    • 《ISCIENCE》
    • 2025年
    • 28卷
    • 11期
    • 期刊

    Endocannabinoids (eCBs) modulate the activity of proteins expressed at the plasma and intracellular membranes. Nothing is known about the dynamic changes in eCB levels in these subcellular compartments. We leveraged the eCB sensor, GRABeCB2.0, to establish the stimulus-induced increases in the eCB, 2-arachidonoyl glycerol (2-AG), at the plasma and intracellular membranes of undifferentiated Neuro2a cells in culture. Activating G protein-coupled B 2 receptors with bradykinin increased 2-AG levels at both the plasma and intracellular membranes within approximate to 5 and approximate to 15 s, respectively. By contrast, the activation of G proteins by the small peptide mastoparan and the ensuing opening of plasma membrane calcium channels increased 2-AG levels in plasma membrane within approximate to 1-2 s and in intracellular membranes after approximate to 30 s. While both these stimuli-induced increases in 2-AG production involved canonical lipases, they required distinct sources of calcium. Thus, distinct stimuli differentially increase 2-AG levels at plasma and intracellular membranes via distinct molecular mechanisms.

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  • 2.CRABPs Alter all-trans-Retinoic Acid Metabolism by CYP26A1via Protein-Protein Interactions

    • 关键词:
    • BINDING-PROTEINS; CELL; EXPRESSION; INHIBITION; HYDROXYLASE; AFFINITIES; SUBSTRATE; TISSUE; ROLES; CRBP
    • Yabut, King Clyde B.;Isoherranen, Nina
    • 《NUTRIENTS》
    • 2022年
    • 14卷
    • 9期
    • 期刊

    Cellular retinoic acid binding proteins (CRABP1 and CRABP2) bind all-trans-retinoic acid (atRA), the active metabolite of vitamin A, with high affinity. CRABP1 and CRABP2 have been shown to interact with the atRA-clearing cytochrome P450 enzymes CYP26B1 and CYP26C1 and with nuclear retinoic acid receptors (RARs). We hypothesized that CRABP1 and CRABP2 also alter atRA metabolism and clearance by CYP26A1, the third key atRA-metabolizing enzyme in the CYP26 family. Based on stopped-flow experiments, atRA bound CRABP1 and CRABP2 with K-d values of 4.7 nM and 7.6 nM, respectively. The unbound atRA K-m values for 4-OH-atRA formation by CYP26A1 were 4.7 +/- 0.8 nM with atRA, 6.8 +/- 1.7 nM with holo-CRABP1 and 6.1 +/- 2.7 nM with holo-CRABP2 as a substrate. In comparison, the apparent k(cat) value was about 30% lower (0.71 +/- 0.07 min(-1) for holo-CRABP1 and 0.75 +/- 0.09 min(-1) for holo-CRABP2) in the presence of CRABPs than with free atRA (1.07 +/- 0.08 min(-1)). In addition, increasing concentrations in apo-CRABPs decreased the 4-OH-atRA formation rates by CYP26A1. Kinetic analyses suggest that apo-CRABP1 and apo-CRABP2 inhibit CYP26A1 (K-i = 0.39 nM and 0.53 nM, respectively) and holo-CRABPs channel atRA for metabolism by CYP26A1. These data suggest that CRABPs play a critical role in modulating atRA metabolism and cellular atRA concentrations.

    ...
  • 4.Kinase Signaling in Dendritic Development and Disease

    • 关键词:
    • dendrites; kinases; neurodevelopmental diseases; neurological disorder;kinome

    Dendrites undergo extensive growth and remodeling during their lifetime. Specification of neurites into dendrites is followed by their arborization, maturation, and functional integration into synaptic networks. Each of these distinct developmental processes is spatially and temporally controlled in an exquisite fashion. Protein kinases through their highly specific substrate phosphorylation regulate dendritic growth and plasticity. Perturbation of kinase function results in aberrant dendritic growth and synaptic function. Not surprisingly, kinase dysfunction is strongly associated with neurodevelopmental and psychiatric disorders. Herein, we review, (a) key kinase pathways that regulate dendrite structure, function and plasticity, (b) how aberrant kinase signaling contributes to dendritic dysfunction in neurological disorders and (c) emergent technologies that can be applied to dissect the role of protein kinases in dendritic structure and function.

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  • 5.Structural Basis for High-Affinity Trapping of the Na(V)1.7 Channel in Its Resting State by Tarantula Toxin

    • Wisedchaisri, Goragot;Tonggu, Lige;El-Din, Tamer M. Gamal;McCord, Eedann;Zheng, Ning;Catterall, William A.
    • 《MOLECULAR CELL》
    • 2021年
    • 81卷
    • 1期
    • 期刊

    Voltage-gated sodium channels initiate electrical signals and are frequently targeted by deadly gating-modifier neurotoxins, including tarantula toxins, which trap the voltage sensor in its resting state. The structural basis for tarantula-toxin action remains elusive because of the difficulty of capturing the functionally relevant form of the toxin-channel complex. Here, we engineered the model sodium channel Na(V)Ab with voltage-shifting mutations and the toxin-binding site of human Na(V)1.7, an attractive pain target. This mutant chimera enabled us to determine the cryoelectronmicroscopy (cryo-EM) structure of the channel functionally arrested by tarantula toxin. Our structure reveals a high-affinity resting-state-specific toxin-channel interaction between a key lysine residue that serves as a "stinger'' and penetrates a triad of carboxyl groups in the S3-S4 linker of the voltage sensor. By unveiling this high-affinity binding mode, our studies establish a high-resolution channel-docking and resting-state locking mechanism for huwentoxin-IV and provide guidance for developing future resting-state-targeted analgesic drugs.

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  • 7.Design and characterization of novel dual Fc antibody with enhanced avidity for Fc receptors

    • 关键词:
    • HUMAN IGG1; EFFECTOR FUNCTIONS; CHAIN DIMERS; GAMMA-RIII; BINDING; CYTOTOXICITY; VARIANTS; COMPLEMENT; EXPRESSION; HEXAMERS
    • Goulet, Dennis R.;Zwolak, Adam;Williams, James A.;Chiu, Mark L.;Atkins, William M.
    • 《PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS》
    • 期刊

    Monoclonal antibodies (mAbs) have become an important class of therapeutics, particularly in the realm of anticancer immunotherapy. While the two antigen-binding fragments (Fabs) of an mAb allow for high-avidity binding to molecular targets, the crystallizable fragment (Fc) engages immune effector elements. mAbs of the IgG class are used for the treatment of autoimmune diseases and can elicit antitumor immune functions not only by several mechanisms including direct antigen engagement via their Fab arms but also by Fab binding to tumors combined with Fc engagement of complement component C1q and Fc gamma receptors. Additionally, IgG binding to the neonatal Fc receptor (FcRn) allows for endosomal recycling and prolonged serum half-life. To augment the effector functions or half-life of an IgG1 mAb, we constructed a novel "2Fc" mAb containing two Fc domains in addition to the normal two Fab domains. Structural and functional characterization of this 2Fc mAb demonstrated that it exists in a tetrahedral-like geometry and retains binding capacity via the Fab domains. Furthermore, duplication of the Fc region significantly enhanced avidity for Fc receptors Fc gamma RI, Fc gamma RIIIa, and FcRn, which manifested as a decrease in complex dissociation rate that was more pronounced at higher densities of receptor. At intermediate receptor density, the dissociation rate for Fc receptors was decreased 6- to 130-fold, resulting in apparent affinity increases of 7- to 42-fold. Stoichiometric analysis confirmed that each 2Fc mAb may simultaneously bind two molecules of Fc gamma RI or four molecules of FcRn, which is double the stoichiometry of a wild-type mAb. In summary, duplication of the IgG Fc region allows for increased avidity to Fc receptors that could translate into clinically relevant enhancement of effector functions or pharmacokinetics.

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  • 8.Expression and Function of Eicosanoid-Producing Cytochrome P450Enzymes in Solid Tumors

    • 关键词:
    • SOLUBLE EPOXIDE HYDROLASE; ARACHIDONIC-ACID METABOLITES; EPITHELIAL OVARIAN-CANCER; CELL LUNG-CANCER; EPOXYEICOSATRIENOIC ACIDS; BLADDER-CANCER; HUMAN LIVER; IN-VITRO; RISK-FACTORS; CIGARETTE-SMOKING
    • Evangelista, Eric A.;Cho, Christi W.;Aliwarga, Theresa;Totah, Rheem A.
    • 《FRONTIERS IN PHARMACOLOGY》
    • 2020年
    • 11卷
    • 期刊

    Oxylipins derived from the oxidation of polyunsaturated fatty acids (PUFAs) act as important paracrine and autocrine signaling molecules. A subclass of oxylipins, the eicosanoids, have a broad range of physiological outcomes in inflammation, the immune response, cardiovascular homeostasis, and cell growth regulation. Consequently, eicosanoids are implicated in the pathophysiology of various diseases, most notably cancer, where eicosanoid mediated signaling is involved in tumor development, progression, and angiogenesis. Cytochrome P450s (CYPs) are a superfamily of heme monooxygenases generally involved in the clearance of xenobiotics while a subset of isozymes oxidize PUFAs to eicosanoids. Several eicosanoid forming CYPs are overexpressed in tumors, elevating eicosanoid levels and suggesting a key function in tumorigenesis and progression of tumors in the lung, breast, prostate, and kidney. This review summarizes the current understanding of CYPs' involvement in solid tumor etiology and progression providing supporting public data for gene expression from The Cancer Genome Atlas.

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  • 9.N-glycosylation of alpha(1D)-adrenergic receptor N-terminal domain is required for correct trafficking, function, and biogenesis

    • 关键词:
    • CELL-SURFACE EXPRESSION; DELTA-OPIOID RECEPTORS; ENDOPLASMIC-RETICULUM; MEMBRANE-PROTEIN; ALPHA-1-ADRENERGIC RECEPTOR; LINKED GLYCOSYLATION; QUALITY-CONTROL; TAIL TRANSLOCATION; PLASMA-MEMBRANE; BLOOD-PRESSURE
    • Janezic, Eric M.;Lauer, Sophia My-Linh;Williams, Robert George;Chungyoun, Michael;Lee, Kyung-Soon;Navaluna, Edelmar;Lau, Ho-Tak;Ong, Shao-En;Hague, Chris
    • 《SCIENTIFIC REPORTS》
    • 2020年
    • 10卷
    • 1期
    • 期刊

    G protein-coupled receptor (GPCR) biogenesis, trafficking, and function are regulated by post-translational modifications, including N-glycosylation of asparagine residues. alpha (1D)-adrenergic receptors (alpha (1D)-ARs) - key regulators of central and autonomic nervous system function - contain two putative N-glycosylation sites within the large N-terminal domain at N65 and N82. However, determining the glycosylation state of this receptor has proven challenging. Towards understanding the role of these putative glycosylation sites, site-directed mutagenesis and lectin affinity purification identified N65 and N82 as bona fide acceptors for N-glycans. Surprisingly, we also report that simultaneously mutating N65 and N82 causes early termination of alpha (1D)-AR between transmembrane domain 2 and 3. Label-free dynamic mass redistribution and cell surface trafficking assays revealed that single and double glycosylation deficient mutants display limited function with impaired plasma membrane expression. Confocal microscopy imaging analysis and SNAP-tag sucrose density fractionation assays revealed the dual glycosylation mutant alpha (1D)-AR is widely distributed throughout the cytosol and nucleus. Based on these novel findings, we propose alpha (1D-)AR transmembrane domain 2 acts as an ER localization signal during active protein biogenesis, and that alpha (1D)-AR N-terminal glycosylation is required for complete translation of nascent, functional receptor.

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