San Diego IRACDA: Professors for the Future
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1.Cannabis consumption conundrum: weighing the risks of vaping and smoking
- 关键词:
- cannabis; metabolomics; smoking; vaping; vaporizer
2.Type II non-ribosomal peptide synthetase proteins: structure, mechanism, and protein-protein interactions
- 关键词:
- BIOSYNTHETIC GENE-CLUSTER; ANTITUMOR ANTIBIOTIC C-1027;4-METHYLIDENEIMIDAZOLE-5-ONE-CONTAINING TYROSINE AMINOMUTASE; POLYKETIDEPHYTOTOXIN CORONATINE; COLI ENTEROBACTIN SYNTHETASE; NONPROTEINOGENICAMINO-ACID; IRON-TRANSPORT COMPOUND; ACYL-COA DEHYDROGENASE; S-CARRIERPROTEIN; 4-METHYL-3-HYDROXYANTHRANILIC ACID
Covering: 1990 to 2019 Many medicinally-relevant compounds are derived from non-ribosomal peptide synthetase (NRPS) products. Type I NRPSs are organized into large modular complexes, while type II NRPS systems contain standalone or minimal domains that often encompass specialized tailoring enzymes that produce bioactive metabolites. Protein-protein interactions and communication between the type II biosynthetic machinery and various downstream pathways are critical for efficient metabolite production. Importantly, the architecture of type II NRPS proteins makes them ideal targets for combinatorial biosynthesis and metabolic engineering. Future investigations exploring the molecular basis or protein-protein recognition in type II NRPS pathways will guide these engineering efforts. In this review, we consolidate the broad range of NRPS systems containing type II proteins and focus on structural investigations, enzymatic mechanisms, and protein-protein interactions important to unraveling pathways that produce unique metabolites, including dehydrogenated prolines, substituted benzoic acids, substituted amino acids, and cyclopropanes.
...3.Plasma Membrane-Associated Restriction Factors and Their Counteraction by HIV-1 Accessory Proteins
- 关键词:
- HIV-1; Vpu; Nef; BST-2; SERINC5; CD4;HUMAN-IMMUNODEFICIENCY-VIRUS; TYPE-1 VPU PROTEIN; CD4 DOWN-REGULATION;CYTOTOXICITY-MEDIATING ANTIBODIES; CELL-SURFACE CD4; NEF PROTEIN;TRANSMEMBRANE DOMAIN; CYTOPLASMIC DOMAIN; ENVELOPE GLYCOPROTEIN;TETHERIN ANTAGONISM
The plasma membrane is a site of conflict between host defenses and many viruses. One aspect of this conflict is the host's attempt to eliminate infected cells using innate and adaptive cell-mediated immune mechanisms that recognize features of the plasma membrane characteristic of viral infection. Another is the expression of plasma membrane-associated proteins, so-called restriction factors, which inhibit enveloped virions directly. HIV-1 encodes two countermeasures to these host defenses: The membrane-associated accessory proteins Vpu and Nef. In addition to inhibiting cell-mediated immune-surveillance, Vpu and Nef counteract membrane-associated restriction factors. These include BST-2, which traps newly formed virions at the plasma membrane unless counteracted by Vpu, and SERINC5, which decreases the infectivity of virions unless counteracted by Nef. Here we review key features of these two antiviral proteins, and we review Vpu and Nef, which deplete them from the plasma membrane by co-opting specific cellular proteins and pathways of membrane trafficking and protein-degradation. We also discuss other plasma membrane proteins modulated by HIV-1, particularly CD4, which, if not opposed in infected cells by Vpu and Nef, inhibits viral infectivity and increases the sensitivity of the viral envelope glycoprotein to host immunity.
...4.Ushering in the cardiac role of Ubiquilin1
- 关键词:
- PROTEIN; UBIQUITINATION; DOMAIN; PLIC-1
Protein quality control (PQC) mechanisms are essential for maintaining cardiac function, and alterations in this pathway influence multiple forms of heart disease. Since heart disease is the leading cause of death worldwide, understanding how the delicate balance between protein synthesis and degradation is regulated in the heart demands attention. The study by Hu et al. reveals that the extraproteasomal ubiquitin receptor Ubiquilin1 (Ubqln1) plays an important role in cardiac ubiquitination-proteasome coupling, particularly in response to myocardial ischemia/reperfusion injury, thereby suggesting that this may be a new avenue for therapeutics.
...5.Microbial Genetic Composition Tunes Host Longevity (vol 169, pg 1249, 2017)
6.BET'ing on Dual JAK/BET Inhibition as a Therapeutic Strategy for Myeloproliferative Neoplasms
- 关键词:
- SELECTIVE-INHIBITION; CELLS; MYELOFIBROSIS; PATHOGENESIS; RESISTANCE;KINASE
In this issue of Cancer Cell, Kleppe et al. describe a combination strategy designed to inhibit BET bromodomain and JAK/STAT signaling as a method for effectively inhibiting NF-kappa B and cytokine production in myeloproliferative neoplasms (MPNs). The results provide a strong rationale for clinical evaluation of dual BET/JAK inhibition in MPNs.
...7.Microbial Genetic Composition Tunes Host Longevity (vol 169, pg 1249, 2017)
