青花菜中莱菔硫烷调控基因QTL精细定位

项目来源

国家自然科学基金(NSFC)

项目主持人

李占省

项目受资助机构

中国农业科学院蔬菜花卉研究所

项目编号

31501761

立项年度

2015

立项时间

未公开

研究期限

未知 / 未知

项目级别

国家级

受资助金额

20.00万元

学科

生命科学-园艺学与植物营养学-蔬菜、瓜果种质资源与遗传育种学

学科代码

C-C15-C1505

基金类别

青年科学基金项目

关键词

调控基因 ; 青花菜 ; 硫甙 ; QTL定位 ; 莱菔硫烷 ; broccoli ; sulforaphane ; regulated gene ; QTL mapping ; glucosinolate

参与者

刘玉梅;舒金帅;张小丽

参与机构

天津市农业科学院

项目标书摘要:青花菜富含莱菔硫烷抗癌活性成分,莱菔硫烷的合成主要受基因型调控,而莱菔硫烷的生成量主要取决于其前体4-甲基亚磺酰基丁基硫甙的合成,4-甲基亚磺酰基丁基硫甙的合成代谢过程中涉及多个基因家族。目前尚不清楚青花菜中莱菔硫烷含量是由哪些硫甙基因调控。本研究拟以花球中莱菔硫烷含量差异显著的2份青花菜高代纯合自交系配制的F1,经小孢子培养获得的DH群体为试验材料,利用8000多对SSR、InDel和SNP标记构建青花菜高密度遗传连锁图谱。利用HPLC技术对青花菜DH群体花球中莱菔硫烷含量进行检测,采用MapQTL 4.0软件对青花菜DH群体花球中莱菔硫烷含量进行QTL精细定位,通过已注释的甘蓝、白菜和拟南芥基因组将主效QTL在甘蓝基因组上进行锚定。该研究为莱菔硫烷调控基因的克隆奠定基础,有利于选育出莱菔硫烷含量较高的青花菜材料和甘蓝类蔬菜新品种。

Application Abstract: Sulforaphane is one of the strongest ingredients of anti-cancer in all of the vegetables.Broccoli(Brassica oleracea L.var.italica)is the highest vegetables in containing sulforaphane.The current study showed that the synthesis of sulforaphane is mainly regulated by genes,and the generation of sulforaphane depends on its precursor glucoraphanin.In the process of glucoraphanin accumulation,multiple family genes are involved.So far,it is unclear how many genes regulate the generation of sulforaphane in the metabolism of glucosinolate.In the study,one F1DH population derived from two inbred line of broccoli lines will be used by isolated microspore culture,and there was a significant difference in the two inbred lines of broccoli.At the same time,more than 8 000 markers including SSR,InDel and SNP will be designed for construction of a high density genetic linkage map.In the study,sulforaphane content will be detected by HPLC.Finally the software MapQTL 4.0 will be used for QTL mapping of sulforaphane content by the F1DH population.The main QTL will be located in the Brassica genome by the annotation genomes of cabbage,Chinese cabbage and Arabidopsis.The study will lay a foundation for cloning of sulforaphane regulated genes,meanwhile materials with higher content of sulforaphane and new varieties of broccoli and the other Brassica vegetables would be promoted by molecular marker assistant.

项目受资助省

北京市

项目结题报告(全文)

青花菜富含莱菔硫烷抗癌活性成分,莱菔硫烷的合成主要受基因型调控,而莱菔硫烷的生成量主要取决于其前体4-甲基亚磺酰基丁基硫甙的合成,4-甲基亚磺酰基丁基硫甙的合成代谢过程中涉及多个基因家族。目前尚不清楚青花菜中莱菔硫烷含量是由哪些硫甙基因调控。本研究拟以花球中莱菔硫烷含量差异显著的2份青花菜高代纯合自交系配制的F1,经小孢子培养获得的DH群体为试验材料,利用8042对SSR、InDel和SNP引物最终构建了一个包含9条连锁群,包含268对分子标记的遗传连锁图谱,该图谱覆盖基因组长度1293 cM,最小遗传距离达到了1.68 cM。利用HPLC技术对青花菜DH群体花球中莱菔硫烷含量进行了分析,采用MapQTL 4.0软件对青花菜DH群体花球中莱菔硫烷含量进行QTL精细定位,获得13个相关QTL,在SF-1QTL区间加密,获得了一个候选基因BOSF(Bol039589)。该研究为莱菔硫烷调控基因的克隆奠定了基础,为青花菜重要农艺性状的定位和基础研究提供了前提。

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  • 1.我国青花菜产业发展现状、存在问题与应对策略

    • 李占省;刘玉梅;方智远;杨丽梅;庄木;张扬勇;吕红豪;王勇
    • 期刊

    <正>近30年来,我国青花菜产业取得了显著发展,2017年种植面积超过7.6万hm~2,总产量354.7万t;2012~2018年,青花菜全国市场批发价总体呈高位波动上行趋势,各月价格分布相对稳定,供需基本平衡;我国青花菜贸易以出口为主,2013~2017年年出口量基本稳定在12万t左右;我国青花菜种子市值超3亿元,以进口种子为主;2018年"国家西兰花良种重大联合科研攻关"取得阶段性成果,筛选出一批苗头品种,有的具有替代国外品种的潜力,推广应用前景广阔。

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  • 2.芥蓝花薹中莱菔硫烷含量的HPLC分析

    • 关键词:
    • 芥蓝 花薹 莱菔硫烷 高效液相色谱法 基金资助:国家自然科学基金项目(3137206731501761); 现代农业产业技术体系建设专项(CARS-25-A); 国家科技支撑计划项目(2013BAD01B04); 农业部园艺作物生物学与种质创制重点实验室项目; 中国农业科学院科技创新工程项目(CAAS-ASTIPIVFCAAS); 专辑:农业科技 专题:园艺 分类号:S635.9 手机阅读
    • 李占省;刘玉梅;方智远;杨丽梅;庄木;张扬勇;李凌云;孙培田
    • 期刊

    以23份芥蓝纯合自交系和21份杂交F1为试材,采用反相高效液相色谱法(RP-HPLC)测定花薹中莱菔硫烷含量,分析芥蓝花薹中莱菔硫烷含量的变化规律。结果表明:44份芥蓝材料花薹中莱菔硫烷含量变异范围为46.89~419.45mg·kg-1(DW),供试材料间莱菔硫烷含量差异达显著水平。获得了1份莱菔硫烷含量较高的F1材料A86,含量为419.45mg·kg-1(DW);3份莱菔硫烷含量较高的高代纯合自交系材料A1、A17和A53,含量分别为298.50、354.19、361.06mg·kg-1(DW),可用于芥蓝抗癌新品种的选育和利用。

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  • 4.Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli

    • 关键词:
    • Cuticular wax; Broccoli; Fine mapping; Candidate gene; Functionalanalysis;ARABIDOPSIS; CER2; TRANSPORTER; MUTANTS; ENCODES; SUBERIN; CLONING;CUTIN
    • Han, Fengqing;Huang, Jingjing;Xie, Qi;Liu, Yumei;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Wang, Yong;Ji, Jialei;Li, Zhansheng
    • 《BMC GENOMICS》
    • 2021年
    • 22卷
    • 1期
    • 期刊

    Background The aerial organs of most terrestrial plants are covered by cuticular waxes, which impart plants a glaucous appearance and play important roles in protecting against various biotic and abiotic stresses. Despite many glossy green (wax-defective) mutants being well characterized in model plants, little is known about the genetic basis of glossy green mutant in broccoli. Results B156 is a spontaneous broccoli mutant showing a glossy green phenotype. Detection by scanning electron microscopy (SEM) and chromatography-mass spectrometry (GC-MS) revealed that B156 is a cuticular wax-defective mutant, lacking waxes mostly longer than C28. Inheritance analysis revealed that this trait was controlled by a single recessive gene, BoGL5. Whole-genome InDel markers were developed, and a segregating F-2 population was constructed to map BoGL5. Ultimately, BoGL5 was mapped to a 94.1 kb interval on C01. The BoCER2 gene, which is homologous to the Arabidopsis CER2 gene, was identified as a candidate of BoGL5 from the target interval. Sequence analyses revealed that Bocer2 in B156 harbored a G-to-T SNP mutation at the 485th nucleotide of the CDS, resulting in a W-to-L transition at the 162nd amino acid, a conserved site adjacent to an HXXXD motif of the deduced protein sequence. Expression analysis revealed that BoCER2 was significantly down-regulated in the leaves, stems, and siliques of B156 mutant than that of B3. Last, ectopic expression of BoCER2 in A. thaliana could, whereas Bocer2 could not, rescue the phenotype of cer2 mutant. Conclusions Overall, this study mapped the locus determining glossy phenotype of B156 and proved BoCER2 is functional gene involved in cuticular wax biosynthesis which would promotes the utilization of BoCER2 to enhance plant resistance to biotic and abiotic stresses, and breeding of B. oleracea cultivars with glossy traits.

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  • 5.Fine mapping of the major QTLs for biochemical variation of sulforaphane in broccoli florets using a DH population

    • 关键词:
    • SEED GLUCOSINOLATE CONTENT; OLERACEA VAR. ITALICA; ARABIDOPSIS-THALIANA;GLUCORAPHANIN LEVEL; MYROSINASE; BIOSYNTHESIS; CABBAGE; TRAITS; PLANTS;IDENTIFICATION
    • Li, Zhansheng;Liu, Yumei;Yuan, Suxia;Han, Fengqing;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Wang, Yong;Ji, Jialei
    • 《SCIENTIFIC REPORTS》
    • 2021年
    • 11卷
    • 1期
    • 期刊

    Glucoraphanin is a major secondary metabolite found in Brassicaceae vegetables, especially broccoli, and its degradation product sulforaphane plays an essential role in anticancer. The fine mapping of sulforaphane metabolism quantitative trait loci (QTLs) in broccoli florets is necessary for future marker-assisted selection strategies. In this study, we utilized a doubled haploid population consisting of 176 lines derived from two inbred lines (86,101 and 90,196) with significant differences in sulforaphane content, coupled with extensive genotypic and phenotypic data from two independent environments. A linkage map consisting of 438 simple sequence repeats markers was constructed, covering a length of 1168.26 cM. A total of 18 QTLs for sulforaphane metabolism in broccoli florets were detected, 10 were detected in 2017, and the other 8 were detected in 2018. The LOD values of all QTLs ranged from 3.06 to 14.47, explaining 1.74-7.03% of the biochemical variation between two years. Finally, 6 QTLs (qSF-C3-1, qSF-C3-2, qSF-C3-3, qSF-C3-5, qSF-C3-6 and qSF-C7) were stably detected in more than one environment, each accounting for 4.54-7.03% of the phenotypic variation explained (PVE) and a total of 30.88-34.86% of PVE. Our study provides new insights into sulforaphane metabolism in broccoli florets and marker-assisted selection breeding in Brassica oleracea crops.

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  • 6.Mapping of QTLs detected in a broccoli double diploid population for planting density traits

    • 关键词:
    • Broccoli; QTL mapping; DH population; Planting density; Planting; Height
    • Huang, Jingjing;Sun, Jifeng;Liu, Eryan;Yuan, Suxia;Liu, Yumei;Han, Fengqing;Li, Zhansheng;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Wang, Yong;Ji, Jialei
    • 《SCIENTIA HORTICULTURAE》
    • 2021年
    • 277卷
    • 期刊

    The planting density of broccoli can directly affect the yield and overall health of plants. Nonetheless, studies on the genetic base of planting density in broccoli are rather limited. In this study, the important planting density dependent factors of broccoli, plant height (PH), maximum outer petiole length (PL) and leaf width (LW), were investigated during 2017 and 2018. In this study, mapping of QTL for PH, PL and LW based on a DH population in broccoli, and as well as the interaction between QTLs and the environment. The DH population was constructed with 176 genotypes obtained from F-1 hybrid produced by crossing two different inbred lines 86101 (P-1) and 90196 (P-2). In our study, a linkage group including a total of 438 SSR markers were constructed covering a length of 1168.26 cM using QTL IciMapping 4.0 software. Finally, there were mainly four QTLs (phc1, phc2, phc4-2, phc4-3), one QTL (plc6-2), and two QTLs (lwc1, lwc3-1) corresponding for PH, PL and LW recurred during the two years. In three environments, inclusive composite interval mapping (ICIM) analysis showed that there was a major QTL for PH at 7.20 cM on chromosome 1 with a high explanatory contribution rate of 20.05 %. The QTL at the 11.10 cM position of chromosome 6 was located for the PL with a high explanatory contribution rate of 20.02 %. The QTL at the 147.00 cM position of chromosome 3 was located on LW with a high explanatory contribution rate of 19.97 %. Interestingly, we found an overlap region (pplc4) in the chromosome 4 containing three QLTs for traits PH, PL, and LW (phc4-2, plc4-3, and lwc4-2). According to this study, the possible positions of candidate genes were screened to provide a basis for further locating and cloning genes for plant height, maximum outer petiole and leaf width, which would be beneficial to breeding of broccoli and the Brassica crops, especially in high planting density.

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  • 7.Characterization of glucosinolates in 80 broccoli genotypes and different organs using UHPLC-Triple-TOF-MS method

    • 关键词:
    • Broccoli; Genotype; Organs; UHPLC-Triple-TOF-MS; Glucosinolate;BIOSYNTHESIS; SULFORAPHANE; ACCUMULATION; ARABIDOPSIS; METABOLISM;IDENTIFICATION; DIVERSITY; ENZYME; CROPS
    • Li, Zhansheng;Zheng, Shuning;Liu, Yumei;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao;Wang, Yong;Xu, Donghui
    • 《FOOD CHEMISTRY》
    • 2021年
    • 334卷
    • 期刊

    We aimed to characterize and quantify glucosinolate compounds and contents in broccoli, and a total of 80 genotypes and eight developmental organs were analyzed with UHPLC-Triple-TOF-MS. The method was validated in terms of performance, and the coefficients of determination (R-2) were 0.97 and 0.99 for glucoraphanin and gluconapin, respectively. In 80 genotypes, twelve glucosinolates were found in broccoli florets ranging from 0.467 to 57.156 mu mol/g DW, with the highest glucosinolate content being approximately 122-fold higher than the lowest value. The principal component of glucobrassicin, neoglucobrassicin and glucoraphanin explained 60.53% of the total variance. There were positive correlations among hydroxyglucobrassicin, methoxyglucobrassicin, glucobrassicin, glucoerucin, gluconasturtiin, glucoraphanin, and glucotropaeolin (P < 0.05). The root contained 43% of total glucosinolates in 80 genotypes, and glucoraphanin represented 29% of the total glucosinolate content in different organs. The mutant broccoli genotypes were found by analysis of gluconapin contents in different organs.

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  • 8.Natural Sulforaphane From Broccoli Seeds Against Influenza A Virus Replication in MDCK Cells

    • 关键词:
    • sulforaphane; broccoli; cytotoxicity; influenza virus;II DETOXIFICATION ENZYMES; PHASE-II; ERUCIN INCREASE; IN-VITRO; NRF2;ANTIINFLUENZA; ISOTHIOCYANATE; EXPRESSION; BINDING; PREVENTION
    • Li, Zhansheng;Liu, Yumei;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao
    • 《NATURAL PRODUCT COMMUNICATIONS》
    • 2019年
    • 14卷
    • 6期
    • 期刊

    We explored the potential application of sulforaphane against influenza A virus and elucidated the underlying cytopathic effect (CPE) and cytotoxicity. In the present study, 2 sulforaphane products were used to investigate the CPEs on influenza A virus replication in Madin-Darby canine kidney cells and to conduct a cytotoxicity test. One was the standard sample and the other was extracted from broccoli seeds. The 2 products of sulforaphane were each diluted to different concentrations. The results indicated that sulforaphane possessed antiviral activity against influenza A/WSN/33 (H1N1) virus, and the standard sulforaphane sample showed biological activity against influenza virus with low cytotoxicity at concentrations of 6.25 to 12.5 mu M. The same phenomenon was observed with a broccoli seed extract concentration of sulforaphane of 6.25 mu M. Both samples displayed higher cytotoxicity at 50 mu M of sulforaphane, and the extract samples showed stronger cytotoxicity at sulforaphane concentrations of 12.5 to 100 mu M compared with the standard, particularly at 100 mu M. In conclusion, natural sulforaphane from broccoli seeds showed potential as an agent against influenza A virus infection, and the CPE after treatment with sulforaphane was concentration dependent; a suitable sulforaphane concentration of 6.25 mu M is suggested and was demonstrated as effective, with high antiviral activity and low cytotoxicity.

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  • 9.Transcriptome reveals the gene expression patterns of sulforaphane metabolism in broccoli florets

    • 关键词:
    • GLUCOSINOLATE BIOSYNTHESIS; MYROSINASE ACTIVITY; NATURAL VARIATION;OILSEED RAPE; PHASE-II; ARABIDOPSIS; GLUCORAPHANIN; HYDROLYSIS; CELLS;ISOTHIOCYANATES
    • Li, Zhansheng;Liu, Yumei;Li, Lingyun;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao
    • 《PLOS ONE》
    • 2019年
    • 14卷
    • 3期
    • 期刊

    Sulforaphane is a new and effective anti-cancer component that is abundant in broccoli. In the past few years, the patterns of variability in glucosinolate content and its regulation in A. thaliana have been described in detail. However, the diversity of glucosinolate and sulforaphane contents in different organs during vegetative and reproductive stages has not been clearly explained. In this paper, we firstly investigated the transcriptome profiles of the developing buds and leaves at bolting stage of broccoli (B52) to further assess the gene expression patterns involved in sulforaphane synthesis. The CYP79F1 gene, as well as nine other genes related to glucorahpanin biosynthesis, MAM1, MAM3, St5b-2, FMO GSOX1, MY, AOP2, AOP3, ESP and ESM1 were selected by digital gene expression analysis and were validated by quantitative real-time PCR (qRT-PCR). Meanwhile, the compositions of glucosinolates and sulforaphane were detected for correlation analysis with related genes. Finally the RNA sequencing libraries generated 147 957 344 clean reads, and 8 539 unigene assemblies were produced. In digital result, only CYP79F1, in the glucoraphanin pathway, was up-regulated in young buds but absent from the other organs, which was consistent with the highest level of sulforaphane content being in this organ compared to mature buds, buds one day before flowering, flowers and leaves. The sequencing results also presented that auxin and cytokinin might affect glucoraphanin accumulation. The study revealed that up-regulated expression of CYP79F1 plays a fundamental and direct role in sulforaphane production in inflorescences. Two genes of MAM1 and St5b-2 could up-regulated glucoraphanin generation. Synergistic expression of MAM1, MAM3, St5b-2, FMO GSOX1, MY, ESP and ESM1 was found in sulforaphane metabolism. This study will be beneficial for understanding the diversity of sulforaphane in broccoli organs.

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  • 10.The evolution of genetic diversity of broccoli cultivars in China since 1980

    • 关键词:
    • Broccoli; Genetic diversity; Cultivars; China; SSR marker;FINGER MILLET; IDENTIFICATION; SULFORAPHANE; MARKERS; POPULATIONS;CABBAGE; GLUCORAPHANIN; CAULIFLOWER; SUPPRESSION; REVEALS
    • Li, Zhansheng;Mei, Yajie;Liu, Yumei;Fang, Zhiyuan;Yang, Limei;Zhuang, Mu;Zhang, Yangyong;Lv, Honghao
    • 《SCIENTIA HORTICULTURAE》
    • 2019年
    • 250卷
    • 期刊

    Broccoli is a worldwide vegetable famous for good nutrition that is particularly rich in sulforaphane. The evolution of 95 broccoli cultivars that were widely collected and cultivated in China since 1980 was evaluated using 35 pairs of SSR markers. Thirty-five markers were selected from 960 pairs of SSR markers designed from Brassica oleracea, rapa and napus by two resources with different maturity periods. The results revealed that all 35 pairs of SSR markers were polymorphic, and 167 alleles were amplified with an average of 4.8 per marker. The mean content was 0.79 for polymorphism information, with a range from 0.48 to 0.99. The genetic diversity indexes ranged from 0.6909 to 0.8969, with an average of 0.7809. Genetic diversity analysis indicated the 95 genotypes could be separated into five primary sub-groups at a 0.72 distance. Sub-group A included more than 70% of genotypes with early and mid-early maturating cultivars, and the cultivars covered more than 87% of the genotypes of the 95 materials, including the primary cultivars widely planted that directed the domestication of broccoli in China in the past 37 years. Sub-groups B and C contained one inbred line with high generation and one DH line, respectively, suggesting both were innovative resources in cultivation. Sub-groups D and E were all inbred lines, and sub-group D had six members with similar characteristics: small florets, high-domed head, tall plants with nearly no lateral branches and good heat tolerance. Sub-group E had five members that presented similar wrinkle leaf morphology, and most matured at an intermediate rate, except IVF-B18. In this study, the evolution of broccoli cultivars in China was first summarized overall, together with their characteristics and distributions in China. Our study provides important information on genetic diversity and for cultivar replacement of broccoli in China, in addition to two new germplasms and polymorphism markers for research and molecular breeding.

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