黄瓜表皮毛形成基因CsGL-1的作用机制研究

项目来源

国家自然科学基金(NSFC)

项目主持人

潘俊松

项目受资助机构

上海交通大学

立项年度

2014

立项时间

未公开

项目编号

31471156

研究期限

未知 / 未知

项目级别

国家级

受资助金额

85.00万元

学科

生命科学-遗传学与生物信息学-基因表达及非编码序列调控

学科代码

C-C06-C0602

基金类别

面上项目

关键词

黄瓜 ; CsGL-1 ; 无毛性状 ; 表皮毛 ; cucumber ; trichome ; glabrous ; CsGL-1

参与者

何欢乐;赵俊龙;王云莉;朱文莹;郭春立;陈龙;曲美玲

参与机构

东北农业大学;深圳大学;青岛农业大学

项目标书摘要:黄瓜的表皮毛是多细胞结构。通过两个黄瓜无毛突变体gl-2 和gl-1,已分离出黄瓜表皮毛形成关键基因CsGL-2和CsGL-1,可能分别调控表皮毛细胞命运的决定,表皮毛细胞的起始。将通过遗传转化、转录组分析、ChIP-seq(染色质免疫共沉淀—测序)等实验,揭示CsGL-1和CsGL-2在黄瓜表皮毛形成过程的作用位点,以及CsGL-1调控的下游基因,探讨黄瓜表皮毛形成的分子机制与调控网络,促进多细胞类型表皮毛的形态建成研究。

Application Abstract: The trichomes of cucumber(Cucumis sativus L.)are multicellular.With two mutant glabrous cucumber lines,gl-2 and gl-1,two crucial genes for trichome formation,CsGL-2 and CsGL-1 had been isolated,which might control the determination and initiation of trichome cells,respectively.By the transformation,transcriptome analysis,ChIP-seq(Chromatin Immunoprecipitation-sequencing),the function locations of CsGL-2 and CsGL-1 for trichome forming,and downstream genes controlled by CsGL-1 would be uncovered.In this project,the study on molecular mechanism and regulation net of trichome formation and development will be useful for the research of multicellular trichome.

项目受资助省

上海市

项目结题报告(全文)

黄瓜的表皮毛和果刺是植株外表的一道天然屏障。本研究利用黄瓜微毛突变体micro-trichome(mict)和无毛突变体trichome-less(tril),通过图位克隆分离获得黄瓜表皮毛形成的关键基因 Mict(CsGL-1)和Tril(CsGL-2)。其中Mict(Csa3G748220)编码Ⅰ型同源异型域—亮氨酸拉链蛋白(HD-Zip Ⅰ)转录因子。Tril(Csa6G514870)编码HD-ZipⅣ家族的转录因子PROTODERMAL FACTOR 2-like。通过遗传分析、转录组测序、cDNA酵母杂交库筛选和遗传转化验证等实验,获得一批与Mict和Tril互作的蛋白,以及受两者直接调控的基因,如与Mict互作的Homeodomain-like转录因子HB3,HB5和HB16等,与Tril互作的Homeodomain-like转录因子HB1和HB6等;提出了黄瓜表皮毛/果刺发育的调控模式:Tril基因决定黄瓜表皮毛细胞的分化起始,受其间接调控的Mict在表皮毛发育过程的早期起作用,中间还涉及其它的转录因子,表皮毛最终发育形成。Mict通过调控CsFLS2、CsTT12、CsCER4和CsMYB36等基因,影响果实表皮的黄酮类代谢、超长链脂肪酸合成,以及蜡粉的形成。本项目的研究为揭示黄瓜表皮毛发育的分子机制打下了坚实基础。

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  • 1.黄瓜蜡质合成调控基因CsWIN1的克隆与功能分析

    • 关键词:
    • 黄瓜 表皮蜡质 CsWIN1 功能分析 基金资助:国家自然科学基金项目(31471156); 上海交通大学Agri-X基金项目(Agri-X2015002); 上海市研究生教育创新计划项目(园艺学); 专辑:农业科技 专题:园艺 DOI:10.27307/d.cnki.gsjtu.2018.004556 分类号:S642.2 导师:蔡润 潘俊松 手机阅读
    • 期刊

    植物表皮蜡质构成了植物地上器官的疏水层,是保护植物免受机械损伤和病原体入侵的第一道屏障。对环境胁迫十分敏感,能够通过调节自身结构组成和含量来抵御外界环境的胁迫,对植物生长、发育及适应环境具有重要意义。此外,表皮蜡质还能使植物表面光泽度发生变化。黄瓜果实光泽性状是其重要的外观品质性状之一,对黄瓜的商品价值意义重大。本研究从黄瓜中同源克隆了WIN1/SHINE1基因,命名为CsWIN1。基因结构和氨基酸序列分析发现,该基因序列全长1456 bp,包含2个外显子,1个内含子,编码区序列(CDS)全长741 bp,编码247个氨基酸,与拟南芥WIN1/SHINE1基因序列相似性达59%,含有一个AP2保守结构域。荧光定量PCR结果表明:CsWIN1在黄瓜植株的叶片和幼果中高表达。在叶片中的特异高表达说明CsWIN1的功能很可能与叶表皮细胞发育相关;在发育初期随着果实的成熟CsWIN1的表达量逐渐上升,但在开花前的各花器官相对低表达,说明CsWIN1可能在果实发育初期发挥功能。烟草亚细胞定位结果显示CsWIN1蛋白定位于细胞核。通过在拟南芥中过表达CsWIN1,发现其与已报道的WIN1/SHINE1过表达株系表型相似。通过对CsWIN1转基因株系的基因表达分析发现,如CER1,CER2和KCS1等蜡质合成相关基因的表达受到了调控。根据以上研究结果,推测黄瓜CsWIN1基因与拟南芥WIN1/SHINE1基因在表皮蜡质合成调控上的功能是保守的,通过调控下游蜡质合成相关基因的表达从而影响蜡质的合成与代谢。此外,通过双荧光素酶报告基因转录激活实验发现,控制毛状体发育并决定表皮细胞命运早期发育阶段的关键基因Tril能够通过激活CsWIN1pro:LUC的表达来激活CsWIN1的表达水平,说明黄瓜表皮毛的发育可能与表皮蜡质的形成相关。目前,对黄瓜表皮蜡质的研究报道较少,关于黄瓜表皮蜡质的合成途径和相关分子机制仍不甚清楚。本研究通过对黄瓜CsWIN1的克隆与功能的初步验证,为进一步研究黄瓜表皮蜡质这一重要品质性状以及其与表皮毛发育的关系奠定了基础。

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  • 2.A SNP of HD-ZIP I transcription factor leads to distortion of trichome morphology in cucumber (Cucumis sativus L.)

    • 《BMC PLANT BIOLOGY》
    • 2021年
    • 21卷
    • 1期
    • 期刊

    BackgroundTrichomes are excellent model systems for the analysis of cell differentiation and play essential roles in plant protection. From cucumber inbred line 'WD1', we identified an EMS-induced trichome abnormally developing mutant, nps, which exhibited smaller, denser and no pyramid-shaped head trichomes.ResultsUsing F-2 and BC1 populations constructed from a cross between nps and '9930', the genetic analysis showed that the nps trait is controlled by a single recessive nuclear gene. We identified CsNps by map-based cloning with 576 individuals of the F-2 population generated from the cross of nps and inbred line '9930'. The CsNps was located at a 13.4-kb genomic region on chromosome 3, which region contains three predicted genes. Sequence analysis showed that only one single nucleotide mutation (C -> T) between 9930 and nps was found in the second exon of Csa3G748220, a plant-specific class I HD-Zip gene. The result of allelism test also indicated that nps is a novel allelic mutant of Mict (Micro-trichome). Thus, nps was renamed mict-L130F. By comparing the transcriptome of mict-L130F vs WD1 and 06-2 (mict) vs 06-1 (wildtype, near-isogenic line of 06-2), several potential target genes that may be related to trichome development were identified.ConclusionsOur results demonstrate that Mict-L130F is involved in the morphogenesis of trichomes. Map-based cloning of the Mict-L130F gene could promote the study of trichome development in cucumber.

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  • 3.Study of micro-trichome (mict) reveals novel connections between transcriptional regulation of multicellular trichome development and specific metabolism in cucumber

    • Pan, Jian;Zhang, Leyu;Chen, Guanqun;Wen, Haifan;Chen, Yue;Du, Hui;Zhao, Junlong;He, Huanle;Lian, Hongli;Chen, Huiming;Shi, Jianxin;Cai, Run;Wang, Gang;Pan, Junsong
    • 《HORTICULTURE RESEARCH》
    • 2021年
    • 8卷
    • 1期
    • 期刊

    Trichomes that cover the epidermis of aerial plant organs play multiple roles in plant protection. Compared with a unicellular trichome in model plants, the development mechanism of the multicellular trichome is largely unclear. Notably, variations in trichome development are often accompanied by defects in the biosynthesis of cuticle and secondary metabolites; however, major questions about the interactions between developmental differences in trichomes and defects in metabolic pathways remain unanswered. Here, we characterized the glabrous mutant mict/csgl1/cstbh via combined metabolomic and transcriptomic analyses to extend our limited knowledge regarding multicellular trichome development and metabolism in cucumber. Mict was found to be explicitly expressed within trichome cells. Transcriptomic analysis indicated that genes involved in flavonoid and cuticle metabolism are significantly downregulated in mict mutants. Further metabolomic analysis confirmed that flavonoids, lipids, and cuticle compositions are dramatically altered in mict mutants. Additional studies revealed that Mict regulates flavonoid, lipid, and cuticle biosynthesis by likely directly binding to downstream functional genes, such as CsTT4, CsFLS1, CsCER26, and CsMYB36. These findings suggest that specific metabolic pathways (e.g., flavonoids and cuticle components) are co-regulated by Mict and provide insights into transcriptional regulation mechanisms of multicellular trichome development and its specific metabolism in cucumber.

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  • 4.The HD-ZIP IV transcription factor Tril regulates fruit spine density through gene dosage effects in cucumber

    • 关键词:
    • Cucumber; Cucumis sativus; fruit spines; HD-Zip IV; ns; Numerous Spines;trichomes; Trichome-less; Tril;TRICHOME DEVELOPMENT; CELL-DIFFERENTIATION; PROMOTE ROOT; ARABIDOPSIS;AUXIN; PROTEIN; INITIATION; IDENTIFICATION; EXPRESSION; ENCODES
    • Du, Hui;Wang, Gang;Pan, Jian;Chen, Yue;Xiao, Tingting;Zhang, Leyu;Zhang, Keyan;Wen, Haifan;Xiong, Liangrong;Yu, Yao;He, Huanle;Pan, Junsong;Cai, Run;Lawson, Tracy
    • 《JOURNAL OF EXPERIMENTAL BOTANY》
    • 2020年
    • 71卷
    • 20期
    • 期刊

    Trichomes and fruit spines are important traits that directly affect the appearance quality and commercial value of cucumber (Cucumis sativus). Tril (Trichome-less), encodes a HD-Zip IV transcription factor that plays a crucial role in the initiation of trichomes and fruit spines, but little is known about the details of the regulatory mechanisms involved. In this study, analysis of tissue expression patterns indicated that Tril is expressed and functions in the early stages of organ initiation and development. Expression of Tril under the control of its own promoter (the TrilPro::Tril-3*flag fragment) could partly rescue the mutant phenotypes of tril, csgl3 (cucumber glabrous 3, an allelic mutant of tril), and fs1 (few spines 1, a fragment substitution in the Tril promoter region), providing further evidence that Tril is responsible for the initiation of trichomes and fruit spines. In lines with dense spine, fs1-type lines, and transgenic lines of different backgrounds containing the TrilPro::Tril-3*flag foreign fragment, spine density increased in conjunction with increases in Tril expression, indicating that Tril has a gene dosage effect on fruit spine density in cucumber. Numerous Spines (NS) is a negative regulatory factor of fruit spine density. Characterization of the molecular and genetic interaction between Tril and NS/ns demonstrated that Tril functions upstream of NS with respect to spine initiation. Overall, our results reveal a novel regulatory mechanism governing the effect of Tril on fruit spine development, and provide a reference for future work on breeding for physical quality in cucumber.

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  • 5.Cucumber CsTRY Negatively Regulates Anthocyanin Biosynthesis and Trichome Formation When Expressed in Tobacco

    • 关键词:
    • cucumber; trichome; anthocyanin; CsTRY; CsMYB6; tobacco;TUBERCULATE FRUIT GENE; PROTEIN; ARABIDOPSIS; ENCODES; DIFFERENTIATION;IDENTIFICATION; INITIATION; TRANSCRIPTION; NETWORK; COMPLEX
    • Zhang, Leyu;Pan, Jian;Wang, Gang;Du, Hui;He, Huanle;Pan, Junsong;Cai, Run
    • 《FRONTIERS IN PLANT SCIENCE》
    • 2019年
    • 10卷
    • 期刊

    The development of trichomes (spines) on cucumber fruits is an important agronomic trait. It has been reported that two MYB family members, CsMYB6 (Csa3G824850) and CsTRY (Csa5G139610) act as negative regulators of trichome or fruit spine initiation. To further study the functions of these two genes, we overexpressed them in tobacco, and found that the flowers and seed coats of transformants overexpressing CsTRY displayed an unexpected defect in pigmentation that was not observed in plants overexpressing CsMYB6. Moreover, the expression of key genes in the flavonoid synthesis pathway was repressed in CsTRY overexpressing plants, which resulted in the decrease of several important flavonoid secondary metabolites. In addition, CsTRY could interact with the AN1 homologous gene CsAN1 (Csa7G044190) in cucumber, which further confirmed that CsTRY not only regulates the development of fruit spines, but also functions in the synthesis of flavonoids, acting as the repressor of anthocyanin synthesis.

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  • 6.农杆菌介导黄瓜Tril基因转化及体系优化

    • 关键词:
    • 黄瓜;6-苄氨基腺嘌呤;卡那霉素;遗传转化
    • 肖婷婷;杜慧;潘健;孙敬贤;陈岳;张乐钰;潘俊松;王刚;何欢乐;蔡润
    • 《上海交通大学学报:农业科学版》
    • 2019年
    • 3期
    • 期刊

    采用农杆菌介导法将黄瓜表皮毛基因Tril转入黄瓜‘新泰密刺’品种,并研究了6-苄氨基腺嘌呤(6-BA)和卡那霉素(Kan)分别对再生和转化苗筛选效果的影响。结果表明,在黄瓜‘新泰密刺’转化中,Kan抗性苗出芽率为9.67%,生根率为3.67%,转化株

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  • 7.Efficient Transposition of the Retrotransposon Tnt1 in Cucumber (Cucumis sativus L.)

    • 关键词:
    • TOBACCO RETROTRANSPOSON; TRANSFORMATION; MUTAGENESIS
    • Zhang Qi;Du Hui;Lv Duo;Xiao Tingting;Pan Jian;He Huanle;Wang Gang;Cai Run;Weng Yiqun;Pan Junsong
    • 《HORTICULTURAL PLANT JOURNAL》
    • 2018年
    • 4卷
    • 3期
    • 期刊

    Tnt1 is an active retrotransposon originally identified in tobacco (Nicotiana tabacum L.) (Gandbastien et al. 1989), but its transposition activity could be activated through tissue culture in other plant species. The insertions are stable and inheritable in the progeny, which has made it a valuable and versatile tool for developing insertional mutagenesis libraries in several plant species. Here, we explored its utility for mutagenesis in cucumber (Cucumis sativus L.). T-3 Tnt1 transgenic cucumber plants were subjected to tissue culture to regenerate self-pollinated progeny. With PCR and analyses and Southern hybridization, we found regenerated plants maintained the original Tnt1 insertion and created new insertions suggesting characteristic re-transposition activity of Tnt1 during this process. Using genome walking, some flanking sequences of Tnt1 insertions were recovered in regenerated plants. The results demonstrated that Tnt1 could be stably inherited and re-transposable during tissue culture in cucumber and that it is feasible to use for developing an insertional mutagenesis library for cucumber.

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  • 8.黄瓜蜡质合成调控基因CsWIN1的克隆与功能初步分析

    • 关键词:
    • 黄瓜;表皮蜡质;CsWIN1;功能分析
    • 李铖;潘健;连红莉;王刚;何欢乐;潘俊松;蔡润
    • 《园艺学报》
    • 2018年
    • 02期
    • 期刊

    从黄瓜中同源克隆了拟南芥中具有调控蜡质合成与代谢功能的基因WIN1/SHINE1,命名为CsWIN1。荧光定量PCR结果表明:CsWIN1在黄瓜植株的叶片和幼果中高表达;通过在拟南芥中过表达CsWIN1,发现其与已报道的WIN1/SHINE1过表达株系表型相似。通过对CsWIN1转基因株系的基因表达分析发现,蜡质合成相关基因的表达受到了调控。根据以上研究结果,推测CsWIN1与拟南芥WIN1/SHINE1在表皮蜡质合成调控上的功能是保守的,通过调控下游蜡质合成相关基因的表达从而影响蜡质的合成与代谢。

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  • 9.Identification and mapping of Tril, a homeodomain-leucine zipper gene involved in multicellular trichome initiation in Cucumis sativus

    • 关键词:
    • Transcription;Transcription factors;Amino acids;Plants (botany);Scanning electron microscopy;Amino acid sequence;Epistatic effects;Greenhouse cucumbers;Map-based cloning;Molecular analysis;Transcriptome profiling;Trichome development;Trichome initiation
    • Wang, Yun-Li;Nie, Jing-tao;Chen, Hui-Ming;Guo, Chun-li;Pan, Jian;He, Huan-Le;Pan, Jun-Song;Cai, Run
    • 《Theoretical and Applied Genetics》
    • 2016年
    • 129卷
    • 2期
    • 期刊

    Key message: Using map-based cloning ofTrilgene, we identified a homeodomain-leucine zipper gene involved in the initiation of multicellular trichomes (including the spines of fruit) in cucumber. Abstract: Fruit spines are a special type of trichome that impacts the quality and appearance of cucumber (Cucumis sativus L.) fruit. Scanning electron microscopy revealed that the trichome-less (tril) mutant originating from European greenhouse cucumber has a completely glabrous phenotype on cotyledons, hypocotyls, young leaves, fruits, and fruit stalks. Genetic analysis revealed that tril was inherited as a recessive allele at a single locus. Using 1058 F2 individuals derived from a cross between cucumber tril mutant CGN19839 and the micro-trichome (mict) mutant 06-2, tril was mapped to chromosome 6, and narrowed down to a 37.4 kb genomic region which carries seven predicted genes. Genetic and molecular analyses revealed that gene Cucsa.045360 is a possible candidate gene for the differentiation of epidermal cells to trichomes. It is a member of the class IV homeodomain-leucine zipper (HD-Zip IV) family and encodes homeodomain and START domain, sharing 66.7 % predicted amino acid sequence identity to PROTODERMAL FACTOR2 (PDF2) and 35.0 % to GLABRA2 (GL2) of Arabidopsis. The homeobox domain had changed amino acid sequence because of an insertion in tril mutant. The results of genetic analysis and transcriptome profiling indicated that the Tril gene had an epistatic effect on the Mict gene in trichome development. Phenotypes of the tril mutant such as glabrous fruits and female flowers at every node could be used in developing new cultivars.
    © 2015, Springer-Verlag Berlin Heidelberg.

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  • 10.Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus

    • 关键词:
    • Cucumis sativus; HD-Zip gene; map-based cloning; multicellular trichome;transcriptome;ARABIDOPSIS; PROTEIN; EXPRESSION; INITIATION; MERISTEM; DIFFERENTIATION;ACTS; MORPHOGENESIS; MECHANISMS; DIVERSITY
    • Zhao, Jun-Long;Pan, Jun-Song;Guan, Yuan;Zhang, Wei-Wei;Bie, Bei-Bei;Wang, Yun-Li;He, Huan-Le;Lian, Hong-Li;Cai, Run
    • 《JOURNAL OF INTEGRATIVE PLANT BIOLOGY》
    • 2015年
    • 57卷
    • 11期
    • 期刊

    Plant trichomes serve as a highly suitable model for investigating cell differentiation at the single-cell level. The regulatory genes involved in unicellular trichome development in Arabidopsis thaliana have been intensively studied, but genes regulating multicellular trichome development in plants remain unclear. Here, we characterized Cucumis sativus (cucumber) trichomes as representative multicellular and unbranched structures, and identified Micro-trichome (Mict), using map-based cloning in an F-2 segregating population of 7,936 individuals generated from a spontaneous mict mutant. In mict plants, trichomes in both leaves and fruits, are small, poorly developed, and denser than in the wild type. Sequence analysis revealed that a 2,649-bp genomic deletion, spanning the first and second exons, occurred in a plant-specific class I homeodomain-leucine zipper gene. Tissue-specific expression analysis indicated that Mict is strongly expressed in the trichome cells. Transcriptome profiling identified potential targets of Mict including putative homologs of genes known in other systems to regulate trichome development, meristem determinacy, and hormone responsiveness. Phylogenic analysis charted the relationships among putative homologs in angiosperms. Our paper represents initial steps toward understanding the development of multicellular trichomes.

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