G Protein Coupled Receptor Structure, Dynamics and Signaling

项目来源

美国卫生和人类服务部基金(HHS)

项目主持人

LEENDERS, MIRIAM

项目受资助机构

STANFORD UNIVERSITY

立项年度

2019

立项时间

未公开

项目编号

5R01NS028471-29

研究期限

未知 / 未知

项目级别

国家级

受资助金额

544920.00美元

学科

NEUROSCIENCES

学科代码

未公开

基金类别

Non-SBIR/STTR RPGs

关键词

未公开

参与者

KOBILKA, BRIAN K.

参与机构

NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE

项目标书摘要:Project Summary G protein coupled receptors (GPCRs) are the largest family of receptors for hormones and neurotransmitters and therefore the largest group of targets for new therapeutics for a very broad spectrum of diseases including neuropsychiatric, cardiovascular, pulmonary and metabolic disorders, cancer and AIDS. While initially thought to signal exclusively though G proteins and function as two-state switches activated by hormones and neurotransmitters, research over the past 30 years has revealed that most GPCRs have complex and diverse signaling behaviors. A single GPCR can activate more than one G protein subtype as well as G protein independent signaling pathways such as arrestins. Many GPCRs exhibit basal, agonist independent activity. When considering one of the several possible downstream signaling pathways, a drug acting at the orthosteric binding pocket may exhibit one of four efficacy profiles. It may behave as an inverse agonist, suppressing basal activity, a full agonist, maximally activating the pathway, a partial agonist, promoting submaximal activity even at saturating concentrations, or a neutral antagonist, having no effect on basal signaling, but blocking the binding of other orthosteric ligands. The efficacy profile of a given ligand may differ for different signaling pathways such that a drug may behave as an agonist for a specific G protein subtype or arrestin while have no effect or inhibiting other signaling pathways. This pathway selective (or biased) signaling has become an important consideration for drug discovery, since one signaling pathway may produce therapeutic effects while another may lead to adverse effects. During the previous funding period we have applied crystallography and several biophysical methods to characterize the structure and dynamic character of the ?2 adrenergic receptor (?2AR). These studies provide evidence that the ?2AR is highly dynamic and conformationally complex. We hypothesize that this complexity is essential for their functional versatility, and believe that a more detailed understanding of this complex conformational landscape will provide mechanistic insights into targeted activation of a specific pathway with biased ligands. The goal of this proposal will be to understand the structural basis for GPCR signaling through multiple pathways using methods that will provide high-resolution structural constraints and characterize protein dynamics under more physiologic conditions.

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  • 1.How GPCR Phosphorylation Patterns Orchestrate Arrestin-Mediated Signaling

    • 关键词:
    • GENERAL FORCE-FIELD; PROTEIN-COUPLED RECEPTORS; MOLECULAR-DYNAMICS; CRYSTAL-STRUCTURE; BETA-ARRESTIN; ADRENERGIC-RECEPTOR; BINDING; DESENSITIZATION; IDENTIFICATION; RECRUITMENT
    • Latorraca, Naomi R.;Masureel, Matthieu;Hollingsworth, Scott A.;Heydenreich, Franziska M.;Suomivuori, Carl-Mikael;Brinton, Connor;Townshend, Raphael J. L.;Bouvier, Michel;Kobilka, Brian K.;Dror, Ron O.
    • 《CELL》
    • 2020年
    • 183卷
    • 7期
    • 期刊

    Binding of arrestin to phosphorylated G-protein-coupled receptors (GPCRs) controls many aspects of cell signaling. The number and arrangement of phosphates may vary substantially for a given GPCR, and different phosphorylation patterns trigger different arrestin-mediated effects. Here, we determine how GPCR phosphorylation influences arrestin behavior by using atomic-level simulations and site-directed spectroscopy to reveal the effects of phosphorylation patterns on arrestin binding and conformation. We find that patterns favoring binding differ from those favoring activation-associated conformational change. Both binding and conformation depend more on arrangement of phosphates than on their total number, with phosphorylation at different positions sometimes exerting opposite effects. Phosphorylation patterns selectively favor a wide variety of arrestin conformations, differently affecting arrestin sites implicated in scaffolding distinct signaling proteins. We also reveal molecular mechanisms of these phenomena. Our work reveals the structural basis for the long-standing "barcode" hypothesis and has important implications for design of functionally selective GPCR-targeted drugs.

    ...
  • 2.Viewing rare conformations of the beta(2) adrenergic receptor with pressure-resolved DEER spectroscopy

    • 关键词:
    • double electron-electron resonance; beta(2) adrenergic receptor; highpressure; conformational selection; basal activity;PROTEIN-COUPLED RECEPTOR; ELECTRON RESONANCE DEER; CONSTITUTIVEACTIVITY; CRYSTAL-STRUCTURE; LIGAND EFFICACY; ACTIVATION;COMPRESSIBILITY; AGONISTS; BETA(2)-ADRENOCEPTOR; EQUILIBRIA
    • Lerch, Michael T.;Matt, Rachel A.;Masureel, Matthieu;Elgeti, Matthias;Kumar, Kaavya Krishna;Hilger, Daniel;Foys, Bryon;Kobilka, Brian K.;Hubbell, Wayne L.
    • 《PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OFAMERICA》
    • 2020年
    • 117卷
    • 50期
    • 期刊

    The beta(2) adrenergic receptor (beta(2)AR) is an archetypal G protein coupled receptor (GPCR). One structural signature of GPCR activation is a large-scale movement (ca. 6 to 14 angstrom) of transmembrane helix 6 (TM6) to a conformation which binds and activates a cognate G protein. The beta(2)AR exhibits a low level of agonist-independent G protein activation. The structural origin of this basal activity and its suppression by inverse agonists is unknown but could involve a unique receptor conformation that promotes G protein activation. Alternatively, a conformational selection model proposes that a minor population of the canonical active receptor conformation exists in equilibrium with inactive forms, thus giving rise to basal activity of the ligand-free receptor. Previous spin-labeling and fluorescence resonance energy transfer experiments designed to monitor the positional distribution of TM6 did not detect the presence of the active conformation of ligand-free beta(2)AR. Here we employ spin-labeling and pressure-resolved double electron-electron resonance spectroscopy to reveal the presence of a minor population of unliganded receptor, with the signature outward TM6 displacement, in equilibrium with inactive conformations. Binding of inverse agonists suppresses this population. These results provide direct structural evidence in favor of a conformational selection model for basal activity in beta(2)AR and provide a mechanism for inverse agonism. In addition, they emphasize 1) the importance of minor populations in GPCR catalytic function; 2) the use of spin-labeling and variable-pressure electron paramagnetic resonance to reveal them in a membrane protein; and 3) the quantitative evaluation of their thermodynamic properties relative to the inactive forms, including free energy, partial molar volume, and compressibility.

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