组织器官生长和尺寸控制的信号基础与感知调控

项目来源

国家重点研发计划(NKRD)

项目主持人

周兆才

项目受资助机构

复旦大学

立项年度

2020

立项时间

未公开

项目编号

2020YFA0803201

研究期限

未知 / 未知

项目级别

国家级

受资助金额

947.00万元

学科

发育编程及其代谢调节

学科代码

未公开

基金类别

未公开

关键词

信号转导 ; 信号通路 ; 分子机制 ; 相分离 ; Signal transduction ; Signal pathway ; Molecular mechanism ; Phase separation

参与者

汪雯佳

参与机构

同济大学;华中科技大学;中国科学院分子细胞科学卓越创新中心

项目标书摘要:本课题主攻组织器官生长和尺寸控制的信号基础研究,主要通过遗传学等筛选策略系统鉴定肝、肠等组织器官生长和尺寸控制的关键信号和因子,并利用模式动物、生化结构和高通量测序等前沿技术手段,揭示组织器官生长和尺寸控制过程中关键信号的诱发与转导机制。在课题开展的前两年,本课题组成员在Hippo信号通路调控器官稳态、组织损伤修复及肿瘤生长等方面取得良好进展,共发现5种与Hippo、mTOR等通路相关的组织器官调控因子,并揭示这些因子响应炎症因子、放化疗等刺激条件下调控尺寸信号的分子机制。同时,正在加速推进肠道类器官研究体系及新型的细胞互作体系的体内外评价,特别是基于邻近标记技术的细胞间直接互作体系取得突破性进展。在此基础上,本课题将继续按照预设目标和进度开展相关功能筛选,发现与肝、肠器官生长和尺寸控制的新型调控因子,揭示这些因子的信号感知及调控机理,为课题二和课题三提供研究基础。

Application Abstract: The focus of topic one is characterization the signal transduction cascades in mediating the tissue development and organ size control.Specifically,we aim to systemically identify the upstream signals to trigger,as well as the mediators to initiate the activation of Hippo and mTOR signaling,as both of which play crucial roles in tissue development and organ size control.Technically,we will apply a wide range of systems including model organisms,structural biology,and novel sequencing strategies to dissect the underlined mechanisms,providing the comprehensive regulatory network in controlling the organ size of both liver and intestine.In the first two years of this five-year project,we achieved great progresses in Hippo signaling regulation at diverse layers and established multiple interrelationships between dysregulation of key factors and diseases.We identified five transcriptional factors related to Hippo or mTOR signaling pathway regulating tissue development and organ size control and deciphered the mechanism.In addition,we have set up several genetic platforms and will start to screen regulators of both liver and intestine development and organ size control in vivo.Taken together,we have fully finished our goals as planned and are moving fast to the next step based on our progresses achieved in these two years.

项目受资助省

上海市

联系人信息

汪雯佳:wangwj@fudan.edu.cn

  • 排序方式:
  • 3
  • /
  • 1.VGLL4 modulates Paneth cells and sustains intestinal homeostasis.

    • 关键词:
    • ATOH1; GFI1; Intestinal Homeostasis; Paneth Cell; VGLL4
    • Zhang, Haoen;Wang, Zuoyun;Wang, Xiaodong;Yu, Wentao;Zhang, Guoying;Zhang, Haijiao;Lu, Yi;Sun, Yang;Lu, Tiantian;Li, Xiaoyu;Yang, Ruizeng;Sun, Jiaqi;Xu, Jinjin;Huang, Shuo;Ma, Xueyan;Ren, Jiale;Tang, Nan;Cheng, Zhonghua;Yu, Jing;Wei, Fang;Zhou, Hu;Li, Jinsong;Qin, Jun;Jin, Yunyun;Zhang, Lei
    • 《EMBO reports》
    • 2026年
    • 期刊

    Paneth cells are defensive cells in the intestinal tract, which secrete niche factors and antimicrobial peptides (AMPs) to maintainthesmall intestinal stem cell niche and immune homeostasis. Here, we show that Vestigial-like family member 4 (VGLL4) plays a pivotal role in maintaining small intestinal homeostasis and in regulating Paneth cells. VGLL4 expression is downregulated in response to irradiation and DSS-induced colitis. Consistently, public datasets of human colitis show reduced VGLL4 expression. Loss of VGLL4 in the intestinal epithelium decreases Paneth cell numbers and AMPs production, and triggers gut microbiota dysbiosis, impairing intestinal regenerative capacity. Mechanistically, VGLL4 forms a complex with TEAD4 and ATOH1, stimulating GFI1 expression and promoting Paneth cell differentiation. Furthermore, VGLL4 forms a complex with TEAD4 and TCF4 to induce defensin expression, thereby maintaining microbiota composition. Collectively, our findings uncover novel roles for VGLL4 in intestinal homeostasis. © 2026. The Author(s).

    ...
  • 2.Loss of cyclin C drives resistance to anti-TIGIT therapy by upregulating CD155-mediated immune evasion

    • 关键词:
    • Immune checkpoint CD155; Transcriptional regulation; Ubiquitination;Immunotherapy;POLIOVIRUS RECEPTOR; CANCER; EXPRESSION; GENES; CD155; CELLS;IMMUNOTHERAPY; TARGET; DNAM-1; CDK8
    • Mao, Shiyu;Guo, Yadong;Dong, Chengyuan;Wang, Dongdong;Wang, Xinbo;Weng, Linjun;Yang, Yanrong;Li, Yaxu;Niu, Tingting;Wu, Qi;Zheng, Zening;Shan, Zezhi;Tan, Xiao;Gao, Yaohui;Jin, Jiali;Wang, Ping;Ge, Xin;Shen, Bing;Yao, Xudong;Fang, Lan
    • 《DRUG RESISTANCE UPDATES》
    • 2025年
    • 84卷
    • 期刊

    Aims: CD155 is an immune checkpoint protein expressed in tumor cells that interacts with its ligand T cell immunoreceptor with immunoglobulin and ITIM domain (TIGIT) on natural killer (NK) cells and T cells, mediating inhibitory regulation on immune cells. Blockade of the CD155-TIGIT interaction has demonstrated clinical benefits in patients with advanced cancers. The transcriptional and post-translational mechanisms governing CD155 expression remain largely unknown. Methods: To identify regulators of CD155, we conducted a genome-wide CRISPR-Cas9 screen in cancer cells. Surface CD155 protein levels were analyzed via flow cytometry. The role of candidate regulators was validated through loss-and gain-of-function experiments with flow cytometry, Western blot, quantitative PCR, and chromatin immunoprecipitation (ChIP) assays. Additionally, ubiquitination assay was performed to examine post-translational modifications. Functional studies, including NK and T cell cytotoxicity assays, were conducted to assess the immune modulatory effects of CD155 regulation. Clinical relevance was evaluated by analyzing Cyclin C (CCNC) and CD155 expression in datasets of cancer patients who underwent immune checkpoint blockade therapy. Results: The CRISPR-Cas9 screen identified CCNC as a transcriptional suppressor of CD155. CCNC knockout led to increased surface CD155 expression in cancer cell lines. Mechanistically, CCNC inhibited CD155 transcription by suppressing the activity of the transcription factor FOSL2. Furthermore, CCNC was found to be ubiquitinated and degraded by the E3 ubiquitin ligase FBXO11, suggesting a post-translational regulatory mechanism. Functionally, loss of CCNC promoted CD155 upregulation, thereby enhancing tumor immune evasion from NK and T cell-mediated responses. Clinically, CCNC expression was negatively correlated with CD155 levels in cancer patients, particularly those receiving immune checkpoint blockade therapy. Conclusion: This study identifies a previously unrecognized master regulator CCNC that functions as a suppressor of CD155-mediated cancer immune evasion. The findings of this study suggest that tumors with low CCNC expression may be resistant to monotherapy and highlight a combination immunotherapy (TIGIT/PD-1 co-blockade) as a promising anti-cancer therapeutic strategy to overcome immune evasion in CCNC-deficient tumors.

    ...
  • 3.Targeting VGLL4 maintains extracellular matrix homeostasis and mitigates osteoarthritis in a preclinical model

    • 关键词:
    • ANALYSIS REVEALS; SMAD3; EXPRESSION
    • Suo, Jinlong;Wang, Duo;Wang, Jinghui;Yin, Xubin;Hu, Xuye;Shao, Rui;Chen, Shuqin;Sun, Shaokun;Feng, Jingyi;Wang, Lijun;Feng, Heng;Li, Zhengda;Hou, Wulei;Zhang, Lei;Chen, Yong;Zheng, Xianyou;Wang, Zuoyun;Zou, Weiguo
    • 《NATURE COMMUNICATIONS》
    • 2025年
    • 16卷
    • 1期
    • 期刊

    Extracellular matrix homeostasis is crucial for hyaline cartilage integrity, however, the mechanism of extracellular matrix homeostasis in hyaline cartilage is poorly understood. Single-cell sequencing shows that VGLL4 is highly expressed in chondrocytes but declines after injury/aging. VGLL4 deficiency impairs collagen/elastin formation, causes extracellular matrix disorganization and osteoarthritis in Col2-CreERT2; Vgll4fl/fl mice, and is exacerbated by destabilization of the medial meniscus surgery. Mechanistically, the VGLL4-TEAD-SMAD3 complex maintains extracellular matrix homeostasis through specific interactions: TEAD4 (E263/D266/ Q269/H427) binds SMAD3 (K81/F260) via hydrogen bonds and hydrophobic contacts, while VGLL4 (H240/F241) engages TEAD4 (F337/F373) through pi-stacking. Notably, intra-articular delivery of adeno-associated virus encoding either SMAD3 or VGLL4 effectively ameliorates osteoarthritis pathology, whereas interaction-deficient mutants lose therapeutic efficacy. This study demonstrates that VGLL4 serves as a critical regulator of extracellular matrix homeostasis in chondrocytes. The VGLL4 complex represents a potential therapeutic target for treating osteoarthritis and cartilage fibrosis.

    ...
  • 4.Hepatocytic ankyrin repeat and SOCS box protein 3 deficiency alleviates metabolic dysfunction-associated steatotic liver disease by decreasing ubiquitin-mediated carnitine palmitoyl transferase 1A

    • 关键词:
    • Ankyrin repeat and SOCS box protein 3; Metabolic dysfunction-associatedsteatotic liver disease; Ubiquitin-proteasome system; Carnitinepalmitoyl transferase 1A; Fatty acid oxidation
    • Lin, Yuli;Hou, Wulei;Ge, Mengxiao;Wu, Zhihao;Huang, Linlin;Liu, Haoye;Zhang, Wenli;Deng, Xiyu;Wang, Lanxin;Guan, Ming;Song, Chunhua;Wang, Zuoyun;Yang, Dongqin
    • 《CLINICAL AND MOLECULAR HEPATOLOGY》
    • 2025年
    • 31卷
    • 4期
    • 期刊

    Background/Aims: Excessive lipid accumulation in hepatocytes is a critical cause of metabolic dysfunction-associated steatotic liver disease (MASLD) progression. Ankyrin repeat and SOCS box protein 3 (ASB3) is an E3 ubiquitin ligase that mediates diverse disease processes; however, the direct substrates of ASB3 in lipid metabolism and its role in MASLD remain unexplored. Methods: We generated ASB3 knockout mice fed a high-fat diet to induce MASLD. Oxygen consumption and fatty acid oxidation (FAO) were used to assess lipid metabolism. LC-MS/MS and IP were used to verify the ASB3 target protein. Correlation analysis was conducted on the cohort of MASLD patients vs. the control group. Results: Loss of the ASB3 E3 ubiquitin ligase in hepatocytes strengthens mitochondrial FAO, thereby influencing energy consumption to decrease triglyceride storage and lipid accumulation. Quantitative lysine ubiquitination proteomics revealed that ASB3 directly mediated the ubiquitin levels at two sites (K180 and K639) in carnitine palmitoyl transferase 1A (CPT1A), a rate-limiting enzyme of FAO, to induce CPT1A degradation. Moreover, both constitutive and hepatocyte-specific ASB3 knockout enhance FAO and delay lipid accumulation, liver steatosis, and MASLD progression in a CPT1A-dependent manner. Hepatic ASB3 deficiency also delays fibrosis in MASLD. Analysis of public databases and liver tissue samples from MASLD patients revealed that ASB3 was highly expressed in MASLD patients and was negatively correlated with CPT1A. Conclusions: Our study reveals the key roles of ASB3 in the development of MASLD and suggests a novel therapeutic potential for MASLD. (Clin Mol Hepatol 2025;31:1333-1354)

    ...
  • 5.The Molecular Basis of Amino Acids Sensing.

    • 关键词:
    • amino acid sensing; amino acid sensor; mTORC1; nutrient stress
    • Jiang, Cong;Tan, Xiao;Jin, Jiali;Wang, Ping
    • 《Advanced science 》
    • 2025年
    • 期刊

    Amino acids are organic compounds that serve as the building blocks of proteins and peptides. Additionally, they function as bioactive molecules that play important roles in metabolic regulation and signal transduction. The ability of cells to sense fluctuations in intracellular and extracellular amino acid levels is vital for effectively regulating protein synthesis and catabolism, maintaining homeostasis, adapting to diverse nutritional environments and influencing cell fate decision. In this review, the recent molecular insights into amino acids sensing are discussed, along with the different sensing mechanisms in distinct organisms. © 2025 The Author(s). Advanced Science published by Wiley‐VCH GmbH.

    ...
  • 6.CENP-I directly targets centromeric DNA to support CENP-A deposition and centromere maintenance.

    • 关键词:
    • CENP-A deposition; CENP-I; centromere; centromeric DNA; kinetochore
    • Hu, Liqiao;Zhao, Congcong;Liu, Mingjie;Liu, Shuaiyu;Ye, Jingjing;Wang, Kehui;Shi, Jinyun;Tian, Wei;He, Xiaojing
    • 《Proceedings of the National Academy of Sciences of the United States of America》
    • 2023年
    • 120卷
    • 11期
    • 期刊

    The enrichment of histone H3 variant CENP-A is the epigenetic mark of centromere and initiates the assembly of the kinetochore at centromere. The kinetochore is a multi-subunit complex that ensures accurate attachment of microtubule centromere and faithful segregation of sister chromatids during mitosis. As a subunit of kinetochore, CENP-I localization at centromere also depends on CENP-A. However, whether and how CENP-I regulates CENP-A deposition and centromere identity remains unclear. Here, we identified that CENP-I directly interacts with the centromeric DNA and preferentially recognizes AT-rich elements of DNA via a consecutive DNA-binding surface formed by conserved charged residues at the end of N-terminal HEAT repeats. The DNA binding-deficient mutants of CENP-I retained the interaction with CENP-H/K and CENP-M, but significantly diminished the centromeric localization of CENP-I and chromosome alignment in mitosis. Moreover, the DNA binding of CENP-I is required for the centromeric loading of newly synthesized CENP-A. CENP-I stabilizes CENP-A nucleosomes upon binding to nucleosomal DNA instead of histones. These findings unveiled the molecular mechanism of how CENP-I promotes and stabilizes CENP-A deposition and would be insightful for understanding the dynamic interplay of centromere and kinetochore during cell cycle.

    ...
  • 8.The tumor suppressor NF2 modulates TEAD4 stability and activity in Hippo signaling via direct interaction

    • 关键词:
    • Acylation;Cell signaling;Transcription;Transcription factors;Tumors;Coactivators;Crucial functions;Direct interactions;Direct links;Hippo pathway;Palmitoylation;Protein-protein interactions;Signalling pathways;TEAD4;Tumour suppressor
    • Wu, Mengying;Hu, Liqiao;He, Lingli;Yuan, Liang;Yang, Lingling;Zhao, Bin;Zhang, Lei;He, Xiaojing
    • 《Journal of Biological Chemistry》
    • 2024年
    • 300卷
    • 5期
    • 期刊

    As an output effector of the Hippo signaling pathway, the TEAD transcription factor and co-activator YAP play crucial functions in promoting cell proliferation and organ size. The tumor suppressor NF2 has been shown to activate LATS1/2 kinases and interplay with the Hippo pathway to suppress the YAP-TEAD complex. However, whether and how NF2 could directly regulate TEAD remains unknown. We identified a direct link and physical interaction between NF2 and TEAD4. NF2 interacted with TEAD4 through its FERM domain and C-terminal tail and decreased the protein stability of TEAD4 independently of LATS1/2 and YAP. Furthermore, NF2 inhibited TEAD4 palmitoylation and induced the cytoplasmic translocation of TEAD4, resulting in ubiquitination and dysfunction of TEAD4. Moreover, the interaction with TEAD4 is required for NF2 function to suppress cell proliferation. These findings reveal an unanticipated role of NF2 as a binding partner and inhibitor of the transcription factor TEAD, shedding light on an alternative mechanism of how NF2 functions as a tumor suppressor through the Hippo signaling cascade. © 2024 The Authors

    ...
  • 9.MST1/2: Important regulators of Hippo pathway in immune system associated diseases

    • 关键词:
    • Hippo pathway; MST1; MST2; Immune system; T cells;LEUKOCYTE ADHESION; TUMOR-SUPPRESSOR; T-CELLS; KINASE; LYMPHOCYTE;ACTIVATION; AUTOIMMUNE; RAPL; IMMUNODEFICIENCY; PHOSPHORYLATION
    • Zhou, Jingjing;Li, Lanfang;Wu, Baojin;Feng, Zhen;Lu, Ying;Wang, Zuoyun
    • 《CANCER LETTERS》
    • 2024年
    • 587卷
    • 期刊

    The Hippo signaling pathway is first found in Drosophila and is highly conserved in evolution. Previous studies on this pathway in mammals have revealed its key role in cell proliferation and differentiation, organ size control, and carcinogenesis. Apart from these, recent findings indicate that mammalian Ste20-like kinases 1 and 2 (MST1/2) have significant effects on immune regulation. In this review, we summarize the updated understanding of how MST1/2 affect the regulation of the immune system and the specific mechanism. The effect of MST1/2 on immune cells and its role in the tumor immune microenvironment can alter the body's response to tumor cells. The relationship between MST1/2 and the immune system suggests new directions in the manipulation of immune responses for clinical immunotherapy, especially for tumor treatment.

    ...
  • 10.SRCAP complex promotes lung cancer progression by reprograming the oncogenic transcription of Hippo-YAP/TAZ signaling pathway

    • 关键词:
    • SRCAP; YAP/TAZ; Hippo pathway; Lung cancer; Oncogenic transcription;HISTONE VARIANT H2A.Z; SWI/SNF COMPLEX; TUMOR-GROWTH; CELL-CYCLE;CHROMATIN; PROTEIN; INO80; YAP; PROLIFERATION; LOCALIZATION
    • Zhang, Huixia;Li, Shasha;Zhou, Runxin;Dong, Tianqi;Zhang, Xiao;Yu, Man;Lin, Jiaming;Shi, Mingjun;Geng, Ershuo;Li, Juebei;Wang, Mingwei;Huang, Liu;Yang, Xiang -Ping;Sun, Shuguo
    • 《CANCER LETTERS》
    • 2024年
    • 585卷
    • 期刊

    The activation of YAP/TAZ, a pair of paralogs of transcriptional coactivators, initiates a dysregulated transcription program, which is a key feature of human cancer cells. However, it is not fully understood how YAP/ TAZ promote dysregulated transcription for tumor progression. In this study, we employed the BioID method to identify the interactome of YAP/TAZ and discovered that YAP/TAZ interact with multiple components of SRCAP complex, a finding that was further validated through endogenous and exogenous co-immunoprecipitation, as well as immunofluorescence experiments. CUT&Tag analysis revealed that SRCAP complex facilitates the deposition of histone variant H2A.Z at target promoters. The depletion of SRCAP complex resulted in a decrease in H2A.Z occupancy and the oncogenic transcription of YAP/TAZ target genes. Additionally, the blockade of SRCAP complex suppressed YAP-driven tumor growth. In a genetically engineered lung adenocarcinoma mouse model and non-small cell lung cancer patients, SRCAP complex and H2A.Z deposition were found to be upregulated. This upregulation was statistically correlated with YAP expression, pathological stages, and poor survival in lung cancer patients. Together, our study uncovers that SRCAP complex plays a critical role in YAP/TAZ oncogenic transcription by coordinating H2A.Z deposition during cancer progression, providing potential targets for cancer diagnosis and prevention.

    ...
  • 排序方式:
  • 3
  • /