Bioinformatic Approaches for Understanding Macrophage Plasticity and Microbiome in Oral Diseases
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1.Increased Stability of Tristetraprolin mRNA Supports Bone Health and Decreases Frailty During Aging
- 关键词:
- Aging; tristetraprolin; myeloid-derived suppressor cells; osteoclasts;BINDING PROTEINS; OLDER-ADULTS; INFLAMMATION; EXPRESSION; MICE
- Thiyagarajan, Ramkumar;Zhang, Lixia;Cortez, Leticia Andrea Rojas;Kwack, Kyu Hwan;Maglaras, Victoria;Yellapu, Nanda Kumar;Arao, Yukitomo;Seldeen, Kenneth L.;Blackshear, Perry J.;Troen, Bruce R.;Kirkwood, Keith L.
- 《AGING AND DISEASE》
- 2026年
- 卷
- 期
- 期刊
Age-related chronic low-grade inflammation contributes to both frailty and bone loss. One of the key regulators of inflammatory signaling that declines with age is tristetraprolin (TTP), an RNA-binding protein that promotes degradation of pro-inflammatory transcripts. In this study, we investigated whether stabilizing TTP during aging could reduce frailty and enhance bone health by mitigating inflammation and immune dysfunction. We utilized a knock-in mouse model (TTP triangle ARE), in which an AU-rich region of the 3 ' untranslated region was deleted to stabilize TTP mRNA and increase protein expression. Aged TTP triangle ARE mice had reduced physical frailty scores, a composite measure based on body weight and physical performance, than age-matched wild-type controls (WT). Since frailty is associated with fracture risk, we examined bone structure. Aged TTP triangle ARE males exhibited significantly higher bone mineral density and improved bone microarchitecture relative to WT mice. Our prior work showed that aging elevates myeloid-derived suppressor cells (MDSCs), which possess osteoclastogenic potential. The monocytic MDSCs (M-MDSCs) from the bone marrow of aged TTP triangle ARE formed fewer osteoclasts than those from WT mice. Further, transcriptomic analysis of M-MDSCs revealed downregulation of bone resorption and remodeling pathways, along with upregulation of immune activation genes. In addition, immunophenotyping revealed a healthier, youthful-like immune profile in aged TTP triangle ARE mice, including increased T-cell reservoirs. These findings signify the critical role of TTP in bone health during aging by regulating osteoimmunological induction of M-MDSCs, which leads to a partial reversal of the age-associated immune senescent phenotype, resulting in increased bone mineral density and improved functional capacity during aging.
...2.Tristetraprolin regulates the skeletal phenotype and osteoclastogenic potential through monocytic myeloid-derived suppressor cells.
- 关键词:
- myeloid-derived suppressor cells; osteoclasts; osteoimmunology; transcriptome; tristetraprolin
- Zhang, Lixia;Kwack, Kyu Hwan;Thiyagarajan, Ramkumar;Mullaney, Kylie K;Lamb, Natalie A;Bard, Jonathan E;Sohn, Jiho;Seldeen, Kenneth L;Arao, Yukitomo;Blackshear, Perry J;Abrams, Scott I;Troen, Bruce R;Kirkwood, Keith L
- 《FASEB journal : official publication of the Federation of American Societies for Experimental Biology》
- 2024年
- 38卷
- 1期
- 期刊
Tristetraprolin (TTP; also known as NUP475, GOS24, or TIS11), encoded by Zfp36, is an RNA-binding protein that regulates target gene expression by promoting mRNA decay and preventing translation. Although previous studies have indicated that TTP deficiency is associated with systemic inflammation and a catabolic-like skeletal phenotype, the mechanistic underpinnings remain unclear. Here, using both TTP-deficient (TTPKO) and myeloid-specific TTPKO (cTTPKO) mice, we reveal that global absence or loss of TTP in the myeloid compartment results in a reduced bone microarchitecture, whereas gain-of-function TTP knock-in (TTPKI) mice exhibit no significant loss of bone microarchitecture. Flow cytometry analysis revealed a significant immunosuppressive immune cell phenotype with increased monocytic myeloid-derived suppressor cells (M-MDSCs) in TTPKO and cTTPKO mice, whereas no significant changes were observed in TTPKI mice. Single-cell transcriptomic analyses of bone marrow myeloid progenitor cell populations indicated a dramatic increase in early MDSC marker genes for both cTTPKO and TTPKO bone marrow populations. Consistent with these phenotypic and transcriptomic data, invitro osteoclastogenesis analysis of bone marrow M-MDSCs from cTTPKO and TTPKO displayed enhanced osteoclast differentiation and functional capacity. Focused transcriptomic analyses of differentiated M-MDSCs showed increased osteoclast-specific transcription factors and cell fusion gene expression. Finally, functional data showed that M-MDSCs from TTP loss-of-function mice were capable of osteoclastogenesis and bone resorption in a context-dependent manner. Collectively, these findings indicate that TTP plays a central role in regulating osteoclastogenesis through multiple mechanisms, including induction of M-MDSCs that appear to regulate skeletal phenotype. © 2023 The Authors. The FASEB Journal published by Wiley Periodicals LLC on behalf of Federation of American Societies for Experimental Biology.
...3.Periodontal disease is associated with increased gut colonization of pathogenic Haemophilus parainfluenzae in patients with Crohn's disease
- 关键词:
- INFLAMMATORY-BOWEL-DISEASE; MICROBIOME; ALIGNMENT; MICE
- Sohn, Jiho;Li, Lu;Zhang, Lixia;Genco, Robert J.;Falkner, Karen L.;Tettelin, Herve;Rowsam, Aryn M.;Smiraglia, Dominic J.;Novak, Jan M.;Diaz, Patricia I.;Sun, Yijun;Kirkwood, Keith L.
- 《CELL REPORTS》
- 2023年
- 42卷
- 2期
- 期刊
Intestinal colonization of the oral bacterium Haemophilus parainfluenzae has been associated with Crohn's disease (CD) severity and progression. This study examines the role of periodontal disease (PD) as a modifier for colonization of H. parainfluenzae in patients with CD and explores the mechanisms behind H. parainfluen-zae-mediated intestinal inflammation. Fifty subjects with and without CD were evaluated for the presence of PD, and their oral and fecal microbiomes were characterized. PD is associated with increased levels of H. parainfluenzae strains in subjects with CD. Oral inoculation of H. parainfluenzae elicits strain-dependent in-testinal inflammation in murine models of inflammatory bowel disease, which is associated with increased intestinal interferon-g (IFN-g)+ CD4+ T cells and disruption of the host hypusination pathway. In summary, this study establishes a strain-specific pathogenic role of H. parainfluenzae in intestinal inflammation and highlights the potential effect of PD on intestinal colonization by pathogenic H. parainfluenzae strains in pa-tients with CD.
...4.Tristetraprolin limits age-related expansion of myeloid-derived suppressor cells
- 关键词:
- aging; tristetraprolin; myeloid-derived suppressor cells; hematopoieticprogenitor cell; myeloid cell; transcriptome; bone marrow;AU-RICH ELEMENTS; MESSENGER-RNA; BONE-MARROW; MACROPHAGES; EXPRESSION;CHEMOKINES; BINDING; ROLES; MICE; DESTABILIZATION
- Kwack, Kyu Hwan;Zhang, Lixia;Kramer, Elliot D.;Thiyagarajan, Ramkumar;Lamb, Natalie A.;Arao, Yukitomo;Bard, Jonathan E.;Seldeen, Kenneth L.;Troen, Bruce R.;Blackshear, Perry J.;Abrams, Scott I.;Kirkwood, Keith L.
- 《FRONTIERS IN IMMUNOLOGY》
- 2022年
- 13卷
- 期
- 期刊
Aging results in enhanced myelopoiesis, which is associated with an increased prevalence of myeloid leukemias and the production of myeloid-derived suppressor cells (MDSCs). Tristetraprolin (TTP) is an RNA binding protein that regulates immune-related cytokines and chemokines by destabilizing target mRNAs. As TTP expression is known to decrease with age in myeloid cells, we used TTP-deficient (TTPKO) mice to model aged mice to study TTP regulation in age-related myelopoiesis. Both TTPKO and myeloid-specific TTPKO (cTTPKO) mice had significant increases in both MDSC subpopulations M-MDSCs (CD11b(+)Ly6C(hi)Ly6G(-)) and PMN-MDSCs (CD11b(+)Ly6C(lo)Ly6G(+)), as well as macrophages (CD11b(+)F4/80(+)) in the spleen and mesenteric lymph nodes; however, no quantitative changes in MDSCs were observed in the bone marrow. In contrast, gain-of-function TTP knock-in (TTPKI) mice had no change in MDSCs compared with control mice. Within the bone marrow, total granulocyte-monocyte progenitors (GMPs) and monocyte progenitors (MPs), direct antecedents of M-MDSCs, were significantly increased in both cTTPKO and TTPKO mice, but granulocyte progenitors (GPs) were significantly increased only in TTPKO mice. Transcriptomic analysis of the bone marrow myeloid cell populations revealed that the expression of CC chemokine receptor 2 (CCR2), which plays a key role in monocyte mobilization to inflammatory sites, was dramatically increased in both cTTPKO and TTPKO mice. Concurrently, the concentration of CC chemokine ligand 2 (CCL2), a major ligand of CCR2, was high in the serum of cTTPKO and TTPKO mice, suggesting that TTP impacts the mobilization of M-MDSCs from the bone marrow to inflammatory sites during aging via regulation of the CCR2-CCL2 axis. Collectively, these studies demonstrate a previously unrecognized role for TTP in regulating age-associated myelopoiesis through the expansion of specific myeloid progenitors and M-MDSCs and their recruitment to sites of injury, inflammation, or other pathologic perturbations.
...5.Porphyromonas gingivalis indirectly elicits intestinal inflammation by altering the gut microbiota and disrupting epithelial barrier function through IL9-producing CD4(+) T cells
- 关键词:
- inflammatory bowel disease; microbiome; periodontitis; Porphyromonasgingivalis;TIGHT JUNCTION PERMEABILITY; NF-KAPPA-B; BOWEL-DISEASE; CROHNS-DISEASE;PERIODONTITIS; LIPOPOLYSACCHARIDE; COLITIS; PATHOGENESIS; PREVALENCE;RISK
- Sohn, Jiho;Li, Lu;Zhang, Lixia;Settem, Rajendra P.;Honma, Kiyonobu;Sharma, Ashu;Falkner, Karen L.;Novak, Jan M.;Sun, Yijun;Kirkwood, Keith L.
- 《MOLECULAR ORAL MICROBIOLOGY》
- 2022年
- 37卷
- 2期
- 期刊
Recent epidemiological studies have shown that inflammatory bowel disease is associated with periodontal disease. The oral-gut microbiota axis is a potential mechanism intersecting the two diseases. Porphyromonas gingivalis is currently considered a keystone oral pathogen involved in periodontal disease pathogenesis and disease progression. Recent studies have shown that oral ingestion of P. gingivalis leads to intestinal inflammation. However, the molecular underpinnings of P. gingivalis-mediated gut inflammation have remained elusive. In this study, we show that the oral administration of P. gingivalis indeed leads to ileal inflammation and alteration in gut microbiota with significant reduction in bacterial alpha diversity despite the absence of P. gingivalis in the lower gastrointestinal tract. Utilizing an antibiotic-conditioned mouse model, cecal microbiota transfer experiments were performed to demonstrate that P. gingivalis-induced dysbiotic gut microbiota is sufficient to reproduce gut pathology. Furthermore, we observed a significant expansion in small intestinal lamina propria IL9(+) CD4(+) T cells, which was negatively correlated with both bacterial and fungal alpha diversity, signifying that P. gingivalis-mediated intestinal inflammation may be due to the subsequent loss of gut microbial diversity. Finally, we detected changes in gene expression related to gut epithelial barrier function, showing the potential downstream effect of intestinal IL9(+)CD4(+) T-cell induction. This study for the first time showed the mechanism behind P. gingivalis-mediated intestinal inflammation where P. gingivalis indirectly induces intestinal IL9(+) CD4(+) T cells and inflammation by altering the gut microbiota. Understanding the mechanism of P. gingivalis-mediated intestinal inflammation may lead to the development of novel therapeutic approaches to alleviate the morbidity from inflammatory bowel disease patients with periodontal disease.
...6.Myeloid-derived suppressor cells in obesity-associated periodontal disease:A conceptual model
- Kwack,Kyu Hwan;Maglaras,Victoria;Thiyagarajan,Ramkumar;Zhang,Lixia;Kirkwood,Keith L;
- 《Periodontol 2000》
- 2021年
- 87卷
- 1期
- 期刊
7.Novel Preosteoclast Populations in Obesity-Associated Periodontal Disease
- 关键词:
- periodontitis; inflammation; bone; myeloid-derived suppressor cells;osteoclasts; metabolic diseases;DIET-INDUCED OBESITY; ALVEOLAR BONE LOSS; HIGH-FAT DIET;SUPPRESSOR-CELLS; INFLAMMATION
- Kwack, K. H.;Zhang, L.;Sohn, J.;Maglaras, V;Thiyagarajan, R.;Kirkwood, K. L.
- 《JOURNAL OF DENTAL RESEARCH》
- 2021年
- 101卷
- 3期
- 期刊
Although there is a clear relationship between the degree of obesity and periodontal disease incidence, the mechanisms that underpin the links between these conditions are not completely understood. Understanding that myeloid-derived suppressor cells (MDSCs) are expanded during obesity and operate in a context-defined manner, we addressed the potential role of MDSCs to contribute toward obesity-associated periodontal disease. Flow cytometry revealed that in the spleen of mice fed a high-fat diet (HFD), expansion in monocytic MDSCs (M-MDSCs) significantly increased when compared with mice fed a low-fat diet (LFD). In the osteoclast differentiation assay, M-MDSCs isolated from the bone marrow of HFD-fed mice showed a larger number and area of osteoclasts with a greater number of nuclei. In the M-MDSCs of HFD-fed mice, several osteoclast-related genes were significantly elevated when compared with LFD-fed mice according to a focused transcriptomic platform. In experimental periodontitis, the number and percentage of M-MDSCs were greater, with a significantly larger increase in HFD-fed mice versus LFD-fed mice. In the spleen, the percentage of M-MDSCs was significantly higher in HFD-fed periodontitis-induced (PI) mice than in LFD-PI mice. Alveolar bone volume fraction was significantly reduced in experimental periodontitis and was further decreased in HFD-PI mice as compared with LFD-PI mice. The inflammation score was significantly higher in HFD-PI mice versus LFD-PI mice, with a concomitant increase in TRAP staining for osteoclast number and area in HFD-PI mice over LFD-PI mice. These data support the concept that M-MDSC expansion during obesity to become osteoclasts during periodontitis is related to increased alveolar bone destruction, providing a more detailed mechanistic appreciation of the interconnection between obesity and periodontitis.
...8.Discovering Myeloid Cell Heterogeneity in Mandibular Bone - Cell by Cell Analysis
- 关键词:
- hematopoietic progenitor cell (HPCs); myeloid cell; transcriptome; bonemarrow; cellular microenvironment; mandible;MARROW STROMAL CELLS; REGULATORY T-CELLS; SUPPRESSOR-CELLS; ALVEOLAR;SITE; PROGENITORS; INDUCTION
- Kwack, Kyu Hwan;Lamb, Natalie A.;Bard, Jonathan E.;Kramer, Elliot D.;Zhang, Lixia;Abrams, Scott, I;Kirkwood, Keith L.
- 《FRONTIERS IN PHYSIOLOGY》
- 2021年
- 12卷
- 期
- 期刊
The myeloid-derived bone marrow progenitor populations from different anatomical locations are known to have diverse osteoclastogenesis potential. Specifically, myeloid progenitors from the tibia and femur have increased osteoclast differentiation potential compared to myeloid progenitors from the alveolar process. In this study, we explored the differences in the myeloid lineage progenitor cell populations in alveolar (mandibular) bone versus long (femur) bone using flow cytometry and high-throughput single cell RNA sequencing (scRNA-seq) to provide a comprehensive transcriptional landscape. Results indicate that mandibular bone marrow-derived cells exhibit consistent deficits in myeloid differentiation, including significantly fewer myeloid-derived suppressor cell (MDSC)-like populations (CD11b(+)Ly6C(+), CD11b(+)Ly6G(+)), as well as macrophages (CD11b(+)F4/80(+)). Although significantly fewer in number, MDSCs from mandibular bone exhibited increased immunosuppressive activity compared to MDSCs isolated from long bone. Using flow cytometry panels specific for bone marrow progenitors, analysis of hematopoietic stem cells showed no defects in mandibular bone marrow in LSK (Lin(-)Sca1(+)cKit(+)) cell and LK (Lin(-)Sca1(-)cKit(+)) cell populations. While there was no significant difference in granulocyte progenitors, the granulocyte-monocyte progenitors and monocyte progenitor population were significantly decreased in the mandibular bone marrow. T-lymphocyte subsets were not significantly different between mandibular and femoral bone, except for CD4(+)CD25(+)Foxp3(+) regulatory T lymphocytes, which were significantly increased in the mandible. In addition, B lymphocytes were significantly increased in mandible. Single cell RNA sequencing from mandible and femur BM revealed distinct differences in transcriptomic profiles in myeloid populations establishing previously unappreciated aspects of mandibular bone marrow populations. These analyses reveal site-specific differences in the myeloid progenitor cellular composition and transcriptional programs providing a deeper appreciation of the complex differences in myeloid cell heterogeneity from different anatomical bone marrow sites.
...9.The p38/MKP-1 signaling axis in oral cancer:Impact of tumor-associated macrophages
- Li,Zhenning;Liu,Fa-Yu;Kirkwood,Keith L;
- 《Oral Oncol》
- 2020年
- 103卷
- 期
- 期刊
